PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.104900.2
Common NameCsa_6G501930, LOC101216171
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family BES1
Protein Properties Length: 256aa    MW: 27340.6 Da    PI: 6.4983
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.104900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822431.7e-13118471149
          DUF822  71 kgskpleeaeaagssasaspesslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslvsss 149
                     +g+kp+  +  +g+sa++s +sslq s++ss ++spv+sy+asp+sssfpsp+++d ++++    llp+l++ s+++++
  Cucsa.104900.2  11 QGCKPP--PIDIGTSANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPTRFDGNPSS---YLLPFLQNISSIPAN 84 
                     789999..7789**********************************************985...9******99988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.5E-101165IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009741Biological Processresponse to brassinosteroid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MFLIYCCYLV QGCKPPPIDI GTSANMSACS SLQPSPQSSC FPSPVPSYHA SPSSSSFPSP  60
TRFDGNPSSY LLPFLQNISS IPANLPPLRI SNSAPVTPPL SSPTSRGSKR KPDWESIPNS  120
YVTSFRHPLF AVSAPSSPTR CHHLTPATIP ECDESDASTV DSGRWVSFQT VAPSVAPPSP  180
TFNLMKPVSQ QNSLQDAVDR HGAMGWGATS DRGRGSEFEF EKFESGTVKP WEGERIHEVG  240
VDDLELTLGG GKARG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143497.11e-176PREDICTED: BES1/BZR1 homolog protein 2
SwissprotQ94A433e-81BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBLA0A0A0KJ101e-175A0A0A0KJ10_CUCSA; Uncharacterized protein
STRINGXP_004143497.11e-176(Cucumis sativus)
STRINGXP_004160145.11e-176(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75080.29e-57BES1 family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]