PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.103820.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MIKC_MADS
Protein Properties Length: 142aa    MW: 16420 Da    PI: 10.4742
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.103820.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.46.7e-271059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n+  rqvtfskRr+g++KKA+ELS+LCdaev +iifss+gk ye++s
  Cucsa.103820.1 10 RIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFAS 59
                    8***********************************************86 PP
2K-box59.41.5e-20841411269
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                     ++ + +q+e++ L+++++nLq+++R+l+Ge+L  Ls+k+L++Le+qLe sl++iR kK
  Cucsa.103820.1  84 SDVKLWQKEVTTLRQQLHNLQENNRKLMGEQLYGLSMKDLNNLENQLEFSLQSIRIKK 141
                     56688**************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.6E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.768161IPR002100Transcription factor, MADS-box
CDDcd002654.00E-40277No hitNo description
SuperFamilySSF554551.27E-31277IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-27323IPR002100Transcription factor, MADS-box
PfamPF003196.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-273859IPR002100Transcription factor, MADS-box
PfamPF014863.4E-1785141IPR002487Transcription factor, K-box
PROSITE profilePS5129710.68686141IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSASRQVT FSKRRKGLIK KAKELSILCD AEVGLIIFSS SGKHYEFASS  60
SMHSIIEKYN RRKEEDELLL NPISDVKLWQ KEVTTLRQQL HNLQENNRKL MGEQLYGLSM  120
KDLNNLENQL EFSLQSIRIK K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-21183183MEF2 CHIMERA
6bz1_B1e-21183183MEF2 CHIMERA
6bz1_C1e-21183183MEF2 CHIMERA
6bz1_D1e-21183183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818752e-85LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132622e-85LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011658484.13e-98PREDICTED: agamous-like MADS-box protein AGL21
SwissprotQ9SZJ62e-69AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBLA0A1S3B0V72e-95A0A1S3B0V7_CUCME; MADS-box transcription factor 23 isoform X3
TrEMBLA0A1S3B1W82e-95A0A1S3B1W8_CUCME; MADS-box transcription factor 23 isoform X1
STRINGXP_004143541.11e-96(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.17e-72AGAMOUS-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu LH, et al.
    Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression.
    Mol Plant, 2017. 10(6): p. 834-845
    [PMID:28438576]
  3. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  4. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]