PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.103760.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 373aa    MW: 41546.9 Da    PI: 4.6221
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.103760.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11172215654
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr ++Pk +      K++  +iL  +++Y+k+L
  Cucsa.103760.1 172 LMAERRRRKRLNDRLSMLRAIVPKiS------KMDRTSILGDTIDYVKEL 215
                     589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.193166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-15169228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-9172215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-11172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14173227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.07E-4173219No hitNo description
CDDcd048730.00341298339No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MELSQHGFLE ELLASTPWTS SYSNGFNDFF QNGWNFTSFD ENPQMASSTF SNFPTIQTPN  60
DFSFADQQLY SNFLEGFAMP ELDSSSYTKN NETPPFVSQE EMSNKNNGYP PVAMEEEELG  120
FIETETAPSV CKVEMEQMGV REINGSIMGV AELGKRSSNK AKKIEGQPSK NLMAERRRRK  180
RLNDRLSMLR AIVPKISKMD RTSILGDTID YVKELLERIN NLKEEEETGL DSNHVGFFNG  240
ISKEGKSNEV QVRNSPKVSG FIVIVCYSLV KSAIVKLMVE ALLLFVTQFD VERKEKETRI  300
DICCATRPGL LLSTVNTLEA LGLEIQQCVI SCFNDFSMQA SCAEGSAQKA VASSDDIKEA  360
LFRNAGYGGK CL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174181ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143539.20.0PREDICTED: transcription factor bHLH93 isoform X2
SwissprotQ9LSL12e-75BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0A0KG390.0A0A0A0KG39_CUCSA; Uncharacterized protein
STRINGXP_004167719.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-77beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]