PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.103400.1 | ||||||||
Common Name | Csa_6G496390, LOC101203323 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | AP2 | ||||||||
Protein Properties | Length: 639aa MW: 70565.4 Da PI: 7.7955 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51 | 3.6e-16 | 291 | 350 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g Cucsa.103400.1 291 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 350 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 32.6 | 2e-10 | 410 | 453 | 9 | 55 |
AP2 9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Cucsa.103400.1 410 HHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 453 456777****988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.2E-13 | 291 | 350 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-16 | 291 | 360 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.28E-22 | 291 | 358 | No hit | No description |
SMART | SM00380 | 2.6E-29 | 292 | 364 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.203 | 292 | 358 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-16 | 292 | 359 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-5 | 293 | 304 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-5 | 340 | 360 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.51E-23 | 393 | 463 | No hit | No description |
PROSITE profile | PS51032 | 17.912 | 394 | 461 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-28 | 394 | 467 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-5 | 410 | 453 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-14 | 410 | 462 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.8E-15 | 411 | 461 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 639 aa Download sequence Send to blast |
MNNVNGNNCN WLGFSVSPNV NMELSSSAAT SVSPSIPANL FHSPSQFNYG ICYGVDGEHG 60 AFYSPLSAMP LKSDGSICSM EALSRQHPQV VSSSTPKLED FFGGATMGSH HYESNDREAM 120 ALSLDSIFCH QNPTHEPNNQ SFAHFSSLRS RELMLQDSKV ILPDGCNLQQ QQQHPGVAQS 180 DISGMKNWTV PRNYAATNNG SFEQKMVSCM SENGGESGSI NAMAYGDLQS LSLSMTMSPS 240 SQSSCVTATQ HVSPAMTDCS AMDTKKRGHE KVDQKQIVHR KSLDTFGQRT SQYRGVTRHR 300 WTGRYEAHLW DNSCKKEGQS RKGRQVYLGG YDMEEKAARA YDLAALKYWG PSTHINFPLE 360 NYQKELEEMK NMSRQEYVAH LRRRSSGFSR GASIYRGVTR SNKSQLKALH HQHGRWQARI 420 GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGMNAVTNF DITRYDVERI IASNTLLSGD 480 LAKRKQQPEF DNESLRQSPP THNSNSEAMT LPSQSSSQSE SDWKMALYHS SQQLIPKPRM 540 LSAINDDGSQ LGVEDSARMG AHFSNASSMV TSCSLSSSRE ESPDKTSLSM VFGMPQSTSK 600 PFATSANNMN TSWIASAQQI RAANCMSQLP VFAAWTDT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011657909.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X1 | ||||
Swissprot | Q38914 | 1e-169 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A0A0KLK4 | 0.0 | A0A0A0KLK4_CUCSA; Uncharacterized protein | ||||
STRING | XP_008440434.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-145 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.103400.1 |
Entrez Gene | 101203323 |