PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.102040.2
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 310aa    MW: 35015.1 Da    PI: 9.8226
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.102040.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-1821111199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv++p+  ++s+ +++p  f++ ++g    + + +++d+s +sW v+l  +  ++ +++++GW+eFv++++Lk g f+vF++dg++ f   vk
  Cucsa.102040.2  21 FFKVFLPN--SSSQSMSIPPAFVKYFNGR--IPSEAIIRDQSRNSWHVTL--EELKNIVLFKDGWQEFVDSHHLKRGYFLVFQYDGSHVF--DVK 107
                     89999555..555559*******655655..56689**************..9**99****************************98888..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f k
  Cucsa.102040.2 108 IFGK 111
                     9876 PP
2B3361.3e-112272923598
                     EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS.SEE..EEEEE- CS
              B3  35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr.sefelvvkvfr 98 
                      l++ de grsW vk +   ++gr+ lt+GW  F  an L   D ++F+  ld++  ++el+vk+ r
  Cucsa.102040.2 227 NLVIIDEMGRSWVVKAR-PISRGRFSLTSGWGAFFIANSLTIDDECTFEfvLDSNnLCGELKVKITR 292
                     68999***********2.445556*************************776777789999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-2318114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.08419112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-2320114IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.7E-1821112IPR003340B3 DNA binding domain
CDDcd100172.72E-1821109No hitNo description
PfamPF023624.2E-1621110IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-13192289IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-11193292IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0031198294IPR003340B3 DNA binding domain
CDDcd100173.21E-9227292No hitNo description
PfamPF023621.1E-8227292IPR003340B3 DNA binding domain
PROSITE profilePS5086310.602228294IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAKSVMAVVD PGSRIPSTLE FFKVFLPNSS SQSMSIPPAF VKYFNGRIPS EAIIRDQSRN  60
SWHVTLEELK NIVLFKDGWQ EFVDSHHLKR GYFLVFQYDG SHVFDVKIFG KNGCKKELVS  120
RISNPVPTVK VKDEPLSEED YSTSLTRCKR SDSEVRSTDS SGTAPKSRRR STSNLEEHSP  180
SKTAKHISMK LPSPTPTFKH IVKHWSYKAI QIPQLIMVSN DILLKPNLVI IDEMGRSWVV  240
KARPISRGRF SLTSGWGAFF IANSLTIDDE CTFEFVLDSN NLCGELKVKI TRSLEITQQE  300
KQKTIVQEG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141939.10.0PREDICTED: putative B3 domain-containing protein At5g66980
TrEMBLA0A0A0KG380.0A0A0A0KG38_CUCSA; Uncharacterized protein
STRINGXP_004141939.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.15e-34B3 family protein