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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.101530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WRKY | ||||||||
Protein Properties | Length: 175aa MW: 20028.2 Da PI: 8.0001 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.1 | 5e-30 | 83 | 141 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YY+C+s +C vkk+ver+++d ++v++tYeg Hnhe Cucsa.101530.1 83 LDDGFKWRKYGKKSVKNSPHPRNYYKCSSGECGVKKRVERDRDDSSYVITTYEGVHNHE 141 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.1E-33 | 68 | 143 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.07E-27 | 76 | 143 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.021 | 78 | 143 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.6E-34 | 83 | 142 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.0E-24 | 84 | 141 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MNSLQNPNFF FDHHQQFDQD HSSSSIMDFL NFSGYPLPDF GLEAETTTDD GWFEGKGVKR 60 KKPRENGRTN RVAFITKSEL EILDDGFKWR KYGKKSVKNS PHPRNYYKCS SGECGVKKRV 120 ERDRDDSSYV ITTYEGVHNH ESPFLMYCNG SKLFHPHPIC PNSSSPPYSS TTTL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-24 | 67 | 143 | 1 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-24 | 67 | 143 | 1 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 1e-71 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 1e-71 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004141964.1 | 1e-114 | PREDICTED: probable WRKY transcription factor 51 | ||||
TrEMBL | A0A0A0KFX2 | 1e-112 | A0A0A0KFX2_CUCSA; Uncharacterized protein | ||||
STRING | XP_004141964.1 | 1e-113 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1120 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 1e-38 | WRKY DNA-binding protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.101530.1 |