PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cucsa.101530.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 175aa MW: 20028.2 Da PI: 8.0001

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.101530.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.1	5e-30	83	141	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YY+C+s +C vkk+ver+++d ++v++tYeg Hnhe Cucsa.101530.1 83 LDDGFKWRKYGKKSVKNSPHPRNYYKCSSGECGVKKRVERDRDDSSYVITTYEGVHNHE 141 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.1E-33	68	143	IPR003657	WRKY domain
SuperFamily	SSF118290	1.07E-27	76	143	IPR003657	WRKY domain
PROSITE profile	PS50811	30.021	78	143	IPR003657	WRKY domain
SMART	SM00774	5.6E-34	83	142	IPR003657	WRKY domain
Pfam	PF03106	6.0E-24	84	141	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MNSLQNPNFF FDHHQQFDQD HSSSSIMDFL NFSGYPLPDF GLEAETTTDD GWFEGKGVKR 60 KKPRENGRTN RVAFITKSEL EILDDGFKWR KYGKKSVKNS PHPRNYYKCS SGECGVKKRV 120 ERDRDDSSYV ITTYEGVHNH ESPFLMYCNG SKLFHPHPIC PNSSSPPYSS TTTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-24	67	143	1	77	Probable WRKY transcription factor 4
2lex_A	1e-24	67	143	1	77	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	1e-71	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	1e-71	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004141964.1	1e-114	PREDICTED: probable WRKY transcription factor 51
TrEMBL	A0A0A0KFX2	1e-112	A0A0A0KFX2_CUCSA; Uncharacterized protein
STRING	XP_004141964.1	1e-113	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1120	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	1e-38	WRKY DNA-binding protein 50

Link Out ? help Back to Top
Phytozome	Cucsa.101530.1