PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.101460.1 | ||||||||
Common Name | Csa_6G486880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WRKY | ||||||||
Protein Properties | Length: 245aa MW: 27872.5 Da PI: 9.41 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.2 | 2.9e-32 | 162 | 220 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++ +prsYYrCt ++C+vkk+ver a+dp++v++tYeg+H h+ Cucsa.101460.1 162 LDDGYKWRKYGQKVVKNTLHPRSYYRCTEENCKVKKRVERLADDPRMVITTYEGRHAHS 220 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-33 | 147 | 220 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.03E-28 | 154 | 221 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.31 | 157 | 222 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.5E-38 | 162 | 221 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.4E-26 | 163 | 219 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901141 | Biological Process | regulation of lignin biosynthetic process | ||||
GO:1904369 | Biological Process | positive regulation of sclerenchyma cell differentiation | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MGSSASEEEM MVRLLKGGDQ VAAAVNAAAI TTNLICLPEN NNKNNIISVV QQSLKPLFFT 60 TTHHHHQQQE QQSLFPFCFP STTTTSHLLP SSPSSLWDER GVSFMRGRNA IGNYGGEDDH 120 NNENDGKPRL RVSTMKMKRI KGRKKVREPR FSFKTMTDVD VLDDGYKWRK YGQKVVKNTL 180 HPRSYYRCTE ENCKVKKRVE RLADDPRMVI TTYEGRHAHS PSDHNLEDSF MGHLPSSHLT 240 NFFC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-26 | 152 | 219 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-26 | 152 | 219 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU984031 | 0.0 | GU984031.1 Cucumis sativus WRKY protein (WRKY43) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011656304.1 | 0.0 | PREDICTED: probable WRKY transcription factor 13-like isoform X1 | ||||
TrEMBL | A0A0A0KFC7 | 0.0 | A0A0A0KFC7_CUCSA; Uncharacterized protein | ||||
STRING | XP_008440122.1 | 1e-137 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4079 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 5e-55 | WRKY DNA-binding protein 13 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.101460.1 |
Entrez Gene | 101208878 |
Publications ? help Back to Top | |||
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