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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cucsa.100440.4 |
| Common Name | Csa_7G033350, WRKY49 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
| Family |
WRKY |
| Protein Properties |
Length: 375aa MW: 41381 Da PI: 6.7013 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.100440.4 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 93.3 | 1.8e-29 | 112 | 169 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
+Dg+nWrKYGqK vkg+ f rsYYrCt+++C+vkk++er++ d+k+++++Y g+H+h+k
Cucsa.100440.4 112 EDGFNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTH-DGKITDTVYFGQHDHPK 169
7***************************************9.***************85 PP
|
| 2 | WRKY | 106.8 | 1.1e-33 | 285 | 342 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58
++Dgy+WrKYGqK vkg+++prsYYrC+s+gCpvkk+ver+++dpk+v +tYeg+H+h
Cucsa.100440.4 285 VNDGYRWRKYGQKFVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKIVLTTYEGQHDH 342
58*******************************************************9 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009863 | Biological Process | salicylic acid mediated signaling pathway |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 375 aa
Download sequence Send
to blast |
MVSTGDGDQL ENEVDSDQLD HENSSDSQPQ ASQDDPGGTN ASKSDHKCTG ASSNTLEEAV 60
KQPEVTIALV DRGEISSIVT EKVTHKPITA EQNPLSVLKV CITSSIREKV SEDGFNWRKY 120
GQKLVKGNVF VRSYYRCTHP TCMVKKQLER THDGKITDTV YFGQHDHPKP QPHIPVPVGV 180
VTMVEEKLGE HASGNSQDKT SIALSQTPQQ TELADMRQPP SVIASDNVKD EVSKRSRTND 240
EVDSDDTPDL KREKKRCNID VTTVADKSTV ESRVVVQTPS EVDIVNDGYR WRKYGQKFVK 300
GNPNPRSYYR CSSPGCPVKK HVERASHDPK IVLTTYEGQH DHVVPPIRTV TLNSVGSTTA 360
QSDETKPKPV LKAN*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | GU984034 | 0.0 | GU984034.1 Cucumis sativus WRKY protein (WRKY49) mRNA, complete cds. |
| Publications
? help Back to Top |
- Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome.
PLoS ONE, 2009. 4(6): p. e5795
[PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
BMC Genomics, 2010. 11: p. 384
[PMID:20565788] - Ling J, et al.
Genome-wide analysis of WRKY gene family in Cucumis sativus.
BMC Genomics, 2011. 12: p. 471
[PMID:21955985] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
BMC Genomics, 2011. 12: p. 540
[PMID:22047402] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Qiao Z,Li CL,Zhang W
WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
Plant Mol. Biol., 2016. 91(1-2): p. 53-65
[PMID:26820136] - Aamir M, et al.
Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
Front Plant Sci, 2017. 8: p. 819
[PMID:28611792]
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