PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

ERF

Protein Properties

Length: 273aa MW: 30868.3 Da PI: 5.1247

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.096930.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.4	8.3e-19	67	115	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ ++k++g Cucsa.096930.1 67 YRGIRQRP-WGKWAAEIRDPRK---GIRVWLGTFNTAEEAARAYDREARKIRG 115 9*****.******954...3**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	3.6E-32	66	124	IPR001471	AP2/ERF domain
SMART	SM00380	3.0E-37	66	129	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.67	66	123	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.81E-22	66	124	IPR016177	DNA-binding domain
CDD	cd00018	9.19E-34	67	124	No hit	No description
PRINTS	PR00367	9.1E-12	67	78	IPR001471	AP2/ERF domain
Pfam	PF00847	1.1E-11	67	115	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.1E-12	89	105	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MCGGAIIADF IPRRDGQRVT ASDIWPNSSL FHFNKIPSNQ VSTPLKRTPL PSSEASKPKK 60 RQRKNLYRGI RQRPWGKWAA EIRDPRKGIR VWLGTFNTAE EAARAYDREA RKIRGKKAKV 120 NFPNEDDTYS IQAPIPQFHP HLYTVPENSE FPYDLNQIGD FTSTHFPVAI EEQSGSGSED 180 SYPPPERFGV KESSEEKPEQ KVSVIAAVEE ENEVQKLSEE LMAYENFMKF YQIPYLDGQS 240 TVTNPAEEQV VGDLWSFDDE DGLHGSVSSS EL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	5e-22	67	123	3	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB125976	0.0	AB125976.1 Cucumis melo CMe-ERF2 mRNA for ERF-like protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004152238.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF073-like
TrEMBL	A0A0A0KT75	0.0	A0A0A0KT75_CUCSA; Uncharacterized protein
STRING	XP_004152238.1	0.0	(Cucumis sativus)
STRING	XP_004156828.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6771	34	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16770.1	3e-37	ethylene-responsive element binding protein

Link Out ? help Back to Top
Phytozome	Cucsa.096930.1
Entrez Gene	101203357

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]