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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cucsa.092550.1 |
Common Name | Csa_1G423190 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
AP2 |
Protein Properties |
Length: 467aa MW: 51384.8 Da PI: 8.849 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.092550.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 48.3 | 2.6e-15 | 137 | 196 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g
Cucsa.092550.1 137 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 196
57*******************666664477446*************************98 PP
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2 | AP2 | 47.4 | 4.7e-15 | 239 | 290 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g
Cucsa.092550.1 239 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 290
57****************988532...5************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009845 | Biological Process | seed germination |
GO:0040019 | Biological Process | positive regulation of embryonic development |
GO:0048364 | Biological Process | root development |
GO:0060772 | Biological Process | leaf phyllotactic patterning |
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 467 aa
Download sequence Send
to blast |
MNNSSSSSSS SPPSSSNWLA FSLSNHPDSL SLFHPNPNPN PNPIPTDLSI FSPTVPKLEH 60 FLRPPPPSHY SPHHSQICDS DLKTIAASFL RGPPTSHFPD QHFQHLHAPP PPPPTQPDTP 120 PPPPPKKAVD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQSRKGR QVYLGGYDKE 180 EKAARAYDLA ALKYWGPTTT TNFPVSNYEK ELEDMKNMTR QEFVASLRRR SSGFSRGASI 240 YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDIS 300 RYDVKSIASS NLPIGGMSGA KSKTASDSAA SDGGSRSTDE RDVHHSPPSS STSTFISSSS 360 QPNNNSSSTL SFTMPIKQDP SDQYWSILSY NPDAFNANLP KPDDNNVPVP LFQQPESTMF 420 PAITELGSSG SGMTEGGMYV QQQQQYGTPM AFAKASFFQT PIFGME*
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Publications
? help Back to Top |
- Todd J,Post-Beittenmiller D,Jaworski JG
KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] - Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] - Molitor AM,Bu Z,Yu Y,Shen WH
Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes. PLoS Genet., 2014. 10(1): p. e1004091 [PMID:24465219] - Feng J,Chen D,Berr A,Shen WH
ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development. Plant Physiol., 2016. 172(3): p. 1746-1759 [PMID:27630184] - Santuari L, et al.
The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots. Plant Cell, 2016. 28(12): p. 2937-2951 [PMID:27920338] - Du Y,Scheres B
PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714 [PMID:29078398]
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