PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

TALE

Protein Properties

Length: 322aa MW: 36764.6 Da PI: 4.8343

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.090630.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.9	1.9e-09	250	284	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp++ee+ +L+ +gL+++q+ +WF N+R ++ Cucsa.090630.1 250 KWPYPTEEEKSKLSVTTGLDQKQINNWFINQRKRH 284 569*****************************885 PP
2	ELK	34.8	3.7e-12	204	225	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LK++Ll+KYsgyL+sLk+EF+ Cucsa.090630.1 204 DLKEMLLKKYSGYLSSLKKEFL 225 6********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	1.1E-21	58	102	IPR005540	KNOX1
Pfam	PF03790	4.3E-21	60	101	IPR005540	KNOX1
SMART	SM01256	1.8E-21	105	156	IPR005541	KNOX2
Pfam	PF03791	8.3E-21	109	155	IPR005541	KNOX2
PROSITE profile	PS51213	10.947	204	224	IPR005539	ELK domain
Pfam	PF03789	2.6E-9	204	225	IPR005539	ELK domain
SMART	SM01188	5.9E-6	204	225	IPR005539	ELK domain
PROSITE profile	PS50071	12.503	224	287	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.31E-18	226	296	IPR009057	Homeodomain-like
SMART	SM00389	1.5E-11	226	291	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.7E-25	229	287	IPR009057	Homeodomain-like
CDD	cd00086	2.50E-12	236	287	No hit	No description
Pfam	PF05920	4.1E-17	244	283	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	262	285	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MEEFYRLNNP VITSYSNGVV GSEAIASTSC GEIHEALMVD DDMLQLEAEV TTGLNMSDMI 60 KTQIVNHPLY PKLVSAYIEC QKVGAPPQVA SLLEEIGREN HPSRSSIELG ADPQLDNFME 120 SYCEVLHQYK NELSKPFDEA TMFLTNIELE LSNLCKGSFT MMSDSRSAMN DEVSGTPEEE 180 PSSYEEVEMP RNHEPFCIRK TNQDLKEMLL KKYSGYLSSL KKEFLKKRKK EKLPKDARMA 240 LLDWWNTHYK WPYPTEEEKS KLSVTTGLDQ KQINNWFINQ RKRHWKPPED MRFVLMDGVG 300 AGECMKGSNF YDNGETGSHV I*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	219	228	LKKEFLKKRK
2	225	229	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269\|PubMed:10488233}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681847	1e-131	LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBank	LN713259	1e-131	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004144749.1	0.0	PREDICTED: homeobox protein knotted-1-like 1
Swissprot	Q9FP29	4e-91	KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBL	A0A0A0LGZ6	0.0	A0A0A0LGZ6_CUCSA; Uncharacterized protein
STRING	XP_004158713.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF620	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G70510.1	4e-72	KNOTTED-like from Arabidopsis thaliana 2

Link Out ? help Back to Top
Phytozome	Cucsa.090630.1
Entrez Gene	101203403

Publications ? help Back to Top
Park SH, et al. A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice. Planta, 2007. 227(1): p. 1-12 [PMID:17624547] Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]