PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.088640.1
Common NameCsa_2G401240, LOC101221442
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 149aa    MW: 16193 Da    PI: 6.7809
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.088640.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.41.1e-151262155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    +++kGVr++k +g+Wv+eIr p   g +  r +lg++ ++e Aa a++ a  +l+ 
  Cucsa.088640.1 12 KKFKGVRQRK-WGKWVSEIRIP---G-SqDRLWLGSYSSPEAAAVAHDVAYYCLRR 62
                    59*******9.**********8...4.35************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.05E-241272No hitNo description
PfamPF008476.3E-91361IPR001471AP2/ERF domain
PROSITE profilePS5103220.3891372IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-161372IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-231372IPR001471AP2/ERF domain
SMARTSM003802.6E-231378IPR001471AP2/ERF domain
PRINTSPR003671.8E-71425IPR001471AP2/ERF domain
PRINTSPR003671.8E-73652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MASSSNSPGE TKKFKGVRQR KWGKWVSEIR IPGSQDRLWL GSYSSPEAAA VAHDVAYYCL  60
RRPSNLDHLN FPPMVLPLTN HLLIRDDMSP GSIQRAASDA AMAVDAQYIC NSLGDRGSSG  120
RAGAFQASGD EQYSGLNNDQ DLSIQDYL*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00158DAPTransfer from AT1G22810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818151e-179LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBankLN7132571e-179LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138829.11e-107PREDICTED: ethylene-responsive transcription factor ERF020
SwissprotO805422e-39ERF19_ARATH; Ethylene-responsive transcription factor ERF019
TrEMBLA0A0A0LPY21e-105A0A0A0LPY2_CUCSA; Uncharacterized protein
STRINGXP_004158553.11e-106(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54893054
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.13e-34ERF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Scarpeci TE,Frea VS,Zanor MI,Valle EM
    Overexpression of AtERF019 delays plant growth and senescence, and improves drought tolerance in Arabidopsis.
    J. Exp. Bot., 2017. 68(3): p. 673-685
    [PMID:28204526]