PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.087480.1

Common Name

Csa_2G408970, LOC101211889

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 259aa MW: 29053.6 Da PI: 9.8568

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.087480.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.9	5.1e-33	9	155	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk........lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..... 77 lp+G++F+Ptd+el+ ++L+ kv ++ + + +i+ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+ Cucsa.087480.1 9 LPAGVKFDPTDQELL-QHLEGKVGCDThklllhplI---DefipTIQWEhGICYTHPQKLP-GVRKDGLVRHFFHRPSKAYTTGTRKRRKvhada 98 799**********.99*9999556664432...143333554448******.566666788**************867777 PP NAM 78 .....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g kk+Lv+y g+++k+ekt+W+mh+y+l Cucsa.087480.1 99 ddargEGETRWHKTGKTRPVIV-GGRVKGYKKILVLYtnYGKQKKPEKTNWIMHQYHL 155 7766544788********.9*********6658999**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-37	6	174	IPR003441	NAC domain
PROSITE profile	PS51005	31.876	9	174	IPR003441	NAC domain
Pfam	PF02365	5.2E-15	10	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
GGIHTLPGLP AGVKFDPTDQ ELLQHLEGKV GCDTHKLLLH PLIDEFIPTI QWEHGICYTH 60 PQKLPGVRKD GLVRHFFHRP SKAYTTGTRK RRKVHADADD ARGEGETRWH KTGKTRPVIV 120 GGRVKGYKKI LVLYTNYGKQ KKPEKTNWIM HQYHLGSSEE EKDGEIVVSK VFYQTQPRQC 180 GNNSLQKESI SLKFRGQKSH NNNGVHDHNN NLNTNPLVDF YNPSFISFES NDQNGSSSPH 240 NSHLIPSFAV HGGSSVVS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681916	0.0	LN681916.1 Cucumis melo genomic scaffold, anchoredscaffold00037.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004138789.2	0.0	PREDICTED: NAC domain-containing protein 8-like
Swissprot	O49459	1e-105	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A0A0LQX3	0.0	A0A0A0LQX3_CUCSA; Uncharacterized protein
STRING	XP_004138789.1	0.0	(Cucumis sativus)
STRING	XP_004158586.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-107	NAC domain containing protein 73

Link Out ? help Back to Top
Phytozome	Cucsa.087480.1
Entrez Gene	101211889

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]