PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HB-other

Protein Properties

Length: 499aa MW: 56183.9 Da PI: 7.9329

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.087050.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.6	2.4e-19	14	69	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t++ql +Le+++++++yp++e++ +L+++lgLte+q++ WF+ rR k+k+ Cucsa.087050.3 14 KKRKLKTPSQLVALEKFYNEHKYPTEEMKSQLSEELGLTEKQISGWFCHRRLKDKR 69 89****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.9E-21	2	69	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.59E-17	9	69	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.054	10	70	IPR001356	Homeobox domain
SMART	SM00389	6.0E-17	12	74	IPR001356	Homeobox domain
Pfam	PF00046	8.2E-17	14	69	IPR001356	Homeobox domain
CDD	cd00086	2.18E-17	14	69	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MHSEENKDST EKNKKRKLKT PSQLVALEKF YNEHKYPTEE MKSQLSEELG LTEKQISGWF 60 CHRRLKDKRF CDTYTSVRQD RSSGVIQDHG SGLAQDSCGS TKNGDYWHID PREVESQKPY 120 GHELATDNVL ERRSQYTENV SNMENTSSES SSSLKDRLLS QSENPYDTEV SRYLTHEGAI 180 PPSNPKALSS LRYKPSGYLK VKGEVENAAI TAVKRQLGVQ YREDGPPLGV EFQPLPPGAF 240 ESPAKGPSHD SYYVGNPLLP RSPDILTLKK QRAVGSRYEV HSSNMSSQDS YREEAAPTGT 300 TCRPESQEKN SVYQLKKGSN YYNKTDTFPR QNSPLNVYEE SGGLTFSSSS KRDHKMNPSY 360 NFPRSRSDSV SNNHGSYSSK IVSEPTEMQL HNHGSVASRS FYRSGYLDYN PKKMPKEMFS 420 GEEKAINESS DPVRGKIPPT NELAVVNRCQ LDFPRSDYAA KASFSEKPGR KNLTRRPITE 480 MPYSFTVDEA EDTSSSLD*

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MHSEENKDST EKNKKRKLKT PSQLVALEKF YNEHKYPTEE MKSQLSEELG LTEKQISGWF  60
CHRRLKDKRF CDTYTSVRQD RSSGVIQDHG SGLAQDSCGS TKNGDYWHID PREVESQKPY  120
GHELATDNVL ERRSQYTENV SNMENTSSES SSSLKDRLLS QSENPYDTEV SRYLTHEGAI  180
PPSNPKALSS LRYKPSGYLK VKGEVENAAI TAVKRQLGVQ YREDGPPLGV EFQPLPPGAF  240
ESPAKGPSHD SYYVGNPLLP RSPDILTLKK QRAVGSRYEV HSSNMSSQDS YREEAAPTGT  300
TCRPESQEKN SVYQLKKGSN YYNKTDTFPR QNSPLNVYEE SGGLTFSSSS KRDHKMNPSY  360
NFPRSRSDSV SNNHGSYSSK IVSEPTEMQL HNHGSVASRS FYRSGYLDYN PKKMPKEMFS  420
GEEKAINESS DPVRGKIPPT NELAVVNRCQ LDFPRSDYAA KASFSEKPGR KNLTRRPITE  480
MPYSFTVDEA EDTSSSLD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681842	0.0	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004140200.1	0.0	PREDICTED: uncharacterized protein LOC101207235 isoform X1
TrEMBL	A0A0A0KH14	0.0	A0A0A0KH14_CUCSA; Uncharacterized protein
STRING	XP_004156045.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	2e-87	HB-other family protein

Link Out ? help Back to Top
Phytozome	Cucsa.087050.3
Entrez Gene	101207235

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]