PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.087050.1
Common NameCsa_6G432280, LOC101207235
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HB-other
Protein Properties Length: 507aa    MW: 57044.9 Da    PI: 7.1786
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.087050.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.4e-192277257
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                    +kR   t++ql +Le+++++++yp++e++ +L+++lgLte+q++ WF+ rR k+k+
  Cucsa.087050.1 22 KKRKLKTPSQLVALEKFYNEHKYPTEEMKSQLSEELGLTEKQISGWFCHRRLKDKR 77
                    89****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-21677IPR009057Homeodomain-like
SuperFamilySSF466893.42E-171777IPR009057Homeodomain-like
PROSITE profilePS5007117.0541878IPR001356Homeobox domain
SMARTSM003896.0E-172082IPR001356Homeobox domain
PfamPF000468.4E-172277IPR001356Homeobox domain
CDDcd000862.03E-172277No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MEEELGTAMH SEENKDSTEK NKKRKLKTPS QLVALEKFYN EHKYPTEEMK SQLSEELGLT  60
EKQISGWFCH RRLKDKRFCD TYTSVRQDRS SGVIQDHGSG LAQDSCGSTK NGDYWHIDPR  120
EVESQKPYGH ELATDNVLER RSQYTENVSN MENTSSESSS SLKDRLLSQS ENPYDTEVSR  180
YLTHEGAIPP SNPKALSSLR YKPSGYLKVK GEVENAAITA VKRQLGVQYR EDGPPLGVEF  240
QPLPPGAFES PAKGPSHDSY YVGNPLLPRS PDILTLKKQR AVGSRYEVHS SNMSSQDSYR  300
EEAAPTGTTC RPESQEKNSV YQLKKGSNYY NKTDTFPRQN SPLNVYEESG GLTFSSSSKR  360
DHKMNPSYNF PRSRSDSVSN NHGSYSSKIV SEPTEMQLHN HGSVASRSFY RSGYLDYNPK  420
KMPKEMFSGE EKAINESSDP VRGKIPPTNE LAVVNRCQLD FPRSDYAAKA SFSEKPGRKN  480
LTRRPITEMP YSFTVDEAED TSSSLD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818420.0LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140200.10.0PREDICTED: uncharacterized protein LOC101207235 isoform X1
TrEMBLA0A0A0KH140.0A0A0A0KH14_CUCSA; Uncharacterized protein
STRINGXP_004156045.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57923051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.11e-87HB-other family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]