PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.082250.1

Common Name

Csa_1G408200, LOC101211455

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 455aa MW: 50276.7 Da PI: 6.4203

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.082250.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.4	5.8e-32	247	302	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Cucsa.082250.1 247 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 302 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.27E-17	244	305	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.355	244	304	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-28	245	305	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-26	247	302	IPR006447	Myb domain, plants
Pfam	PF00249	7.9E-7	249	300	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009266	Biological Process	response to temperature stimulus
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0010452	Biological Process	histone H3-K36 methylation
GO:0048579	Biological Process	negative regulation of long-day photoperiodism, flowering
GO:1903507	Biological Process	negative regulation of nucleic acid-templated transcription
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MCVMGSTAEL SLECTVESYS MLLKYSFGDH HDHDQSYDKL QDFVSRLEEE RLKIDVFKRE 60 LPLCMQLLTN AVETSRRQLQ ACKTMEAAAA VGAPTEPILE EFMPLKNSTP AEDEKPTTIT 120 SDKANWMTSV QLWSQAGDVS KQQSESTDDH SKLQDRNNNN NNNNKDNNLE TCSQRINNNG 180 AFVPFNKDRS SGPAAKMELL EKGEKKNCSD NNSSIDGGVV VMAAEQRSEN GAAEVGSGPT 240 TTQTHRKARR CWSPDLHRRF VNALQMLGGS QVATPKQIRE LMKVDGLTND EVKSHLQKYR 300 LHTRRPGPTQ QASGPPAAQL VVLGLGGLWV PPEYAAAAAA PPALYGPAAP SHPPSHFYTP 360 PEFYARTAPP PHLQHHHHHH HQVQLYKGAP PQATQSSPES EVRDTAERSE SFEEEKSGSS 420 SWRIEGGENG RGSCGRRSEE NEESNNRSEI TLKF*

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MCVMGSTAEL SLECTVESYS MLLKYSFGDH HDHDQSYDKL QDFVSRLEEE RLKIDVFKRE  60
LPLCMQLLTN AVETSRRQLQ ACKTMEAAAA VGAPTEPILE EFMPLKNSTP AEDEKPTTIT  120
SDKANWMTSV QLWSQAGDVS KQQSESTDDH SKLQDRNNNN NNNNKDNNLE TCSQRINNNG  180
AFVPFNKDRS SGPAAKMELL EKGEKKNCSD NNSSIDGGVV VMAAEQRSEN GAAEVGSGPT  240
TTQTHRKARR CWSPDLHRRF VNALQMLGGS QVATPKQIRE LMKVDGLTND EVKSHLQKYR  300
LHTRRPGPTQ QASGPPAAQL VVLGLGGLWV PPEYAAAAAA PPALYGPAAP SHPPSHFYTP  360
PEFYARTAPP PHLQHHHHHH HQVQLYKGAP PQATQSSPES EVRDTAERSE SFEEEKSGSS  420
SWRIEGGENG RGSCGRRSEE NEESNNRSEI TLKF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-13	247	300	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-13	247	300	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-13	247	300	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-13	247	300	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-13	247	300	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-13	247	300	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-13	247	300	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-13	247	300	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-13	247	300	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-13	247	300	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-13	247	300	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-13	247	300	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00261	DAP	Transfer from AT2G03500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681810	0.0	LN681810.1 Cucumis melo genomic scaffold, anchoredscaffold00077.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011656592.1	0.0	PREDICTED: uncharacterized protein LOC101211455
TrEMBL	A0A0A0LX10	0.0	A0A0A0LX10_CUCSA; Uncharacterized protein
STRING	XP_008463337.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5466	34	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	3e-91	G2-like family protein

Link Out ? help Back to Top
Phytozome	Cucsa.082250.1
Entrez Gene	101211455

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]