PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 285aa MW: 31280.8 Da PI: 9.7613

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.066100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.6	5e-37	67	125	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg r+n+k+ Cucsa.066100.1 67 ETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNNKR 125 6789************************************************9999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-33	50	118	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-31	69	124	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	70	124	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	72	108	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MVFPPIPSNY LDPTTHQWQQ QTTNHQSGSG TMIGGSSFQL APSPPSSQVR PGSMADRARM 60 ANLPVPETAL KCPRCESTNT KFCYFNNYSL SQPRHFCKTC RRYWTRGGAL RSVPVGGGYR 120 RNNKRTKSSS KSPVNSQCQP TTTELSGGET MRSNYNNAIS IPNEGAVDST HHHHPIGISN 180 FLGFDQIQWR PQLQLHQTTH PSPLLANSAR LLGNGGINSS LSYSIVGEIQ KKMEATTTTT 240 KMEEDGQQVE VNVGKPFWGV LGGNDNRHYW NGFNPSSSSS HSQV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681888	1e-176	LN681888.1 Cucumis melo genomic scaffold, anchoredscaffold00002.
GenBank	LN713262	1e-176	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004142206.2	0.0	PREDICTED: dof zinc finger protein DOF3.6-like isoform X1
TrEMBL	A0A0A0L265	0.0	A0A0A0L265_CUCSA; Uncharacterized protein
STRING	XP_004142206.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24775	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	2e-42	Dof family protein

Link Out ? help Back to Top
Phytozome	Cucsa.066100.1
Entrez Gene	101207098

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]