PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.065640.1
Common NameCsa_4G292470, LOC101211008
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family AP2
Protein Properties Length: 326aa    MW: 36341.9 Da    PI: 9.103
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.065640.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-172675155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Cucsa.065640.1 26 SQYRGVTYYRRTGRWESHIWD------SgKQVYLGGFDTAHSAARAYDRAAIKFRG 75
                    78*******************......44************************997 PP
2AP244.83e-14118168155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k++g
  Cucsa.065640.1 118 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDSEIEAARAYDKAAIKYNG 168
                     89********.7******5553..2.26**********99************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.29E-162685IPR016177DNA-binding domain
CDDcd000181.73E-232685No hitNo description
PfamPF008474.3E-102675IPR001471AP2/ERF domain
SMARTSM003802.0E-302789IPR001471AP2/ERF domain
PROSITE profilePS5103217.7412783IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-182783IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-17118177IPR016177DNA-binding domain
PfamPF008479.7E-10118168IPR001471AP2/ERF domain
CDDcd000181.19E-24118178No hitNo description
SMARTSM003809.0E-30119182IPR001471AP2/ERF domain
PROSITE profilePS5103216.12119176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-16119177IPR001471AP2/ERF domain
PRINTSPR003679.2E-7120131IPR001471AP2/ERF domain
PRINTSPR003679.2E-7158178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
ATNGIVVQKS AHPAKKGRRG PKSRSSQYRG VTYYRRTGRW ESHIWDSGKQ VYLGGFDTAH  60
SAARAYDRAA IKFRGVHADI NFNISDYNEE IKQMGNFSKE EFVHILRRQS TGFSRGSSKY  120
RGVTLHKCGR WEARMGQFLG KKYVYLGLFD SEIEAARAYD KAAIKYNGRE AVTNFDQSSY  180
EMELAFESEN QDMGDIDLNL GIAPPCPSED QKDNLNGCAP SNLCNLNKSN SERSEFIMER  240
AMEKKMEVES LPNCCWRPIS VPYGGATSVP FFSTAASSGF PSNSPAAVVP PPSPRHLLPL  300
PPFLHHHIPP SIPATNTVTH FYCKT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818421e-110LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132591e-110LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142222.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like
SwissprotB8AMA98e-98AP22_ORYSI; APETALA2-like protein 2
TrEMBLA0A0A0L2100.0A0A0A0L210_CUCSA; Uncharacterized protein
STRINGXP_004166397.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-82related to AP2.7
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]