PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

AP2

Protein Properties

Length: 326aa MW: 36341.9 Da PI: 9.103

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.065640.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.3e-17	26	75	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Cucsa.065640.1 26 SQYRGVTYYRRTGRWESHIWD------SgKQVYLGGFDTAHSAARAYDRAAIKFRG 75 78*****************......44**********************997 PP
2	AP2	44.8	3e-14	118	168	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k++g Cucsa.065640.1 118 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDSEIEAARAYDKAAIKYNG 168 89******.7**5553..2.26******99**********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	2.29E-16	26	85	IPR016177	DNA-binding domain
CDD	cd00018	1.73E-23	26	85	No hit	No description
Pfam	PF00847	4.3E-10	26	75	IPR001471	AP2/ERF domain
SMART	SM00380	2.0E-30	27	89	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	17.741	27	83	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.0E-18	27	83	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.07E-17	118	177	IPR016177	DNA-binding domain
Pfam	PF00847	9.7E-10	118	168	IPR001471	AP2/ERF domain
CDD	cd00018	1.19E-24	118	178	No hit	No description
SMART	SM00380	9.0E-30	119	182	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	16.12	119	176	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.6E-16	119	177	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.2E-7	120	131	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.2E-7	158	178	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
ATNGIVVQKS AHPAKKGRRG PKSRSSQYRG VTYYRRTGRW ESHIWDSGKQ VYLGGFDTAH 60 SAARAYDRAA IKFRGVHADI NFNISDYNEE IKQMGNFSKE EFVHILRRQS TGFSRGSSKY 120 RGVTLHKCGR WEARMGQFLG KKYVYLGLFD SEIEAARAYD KAAIKYNGRE AVTNFDQSSY 180 EMELAFESEN QDMGDIDLNL GIAPPCPSED QKDNLNGCAP SNLCNLNKSN SERSEFIMER 240 AMEKKMEVES LPNCCWRPIS VPYGGATSVP FFSTAASSGF PSNSPAAVVP PPSPRHLLPL 300 PPFLHHHIPP SIPATNTVTH FYCKT*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250\|UniProtKB:P47927, ECO:0000250\|UniProtKB:Q84TB5}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681842	1e-110	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	1e-110	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004142222.1	0.0	PREDICTED: ethylene-responsive transcription factor RAP2-7-like
Swissprot	B8AMA9	8e-98	AP22_ORYSI; APETALA2-like protein 2
TrEMBL	A0A0A0L210	0.0	A0A0A0L210_CUCSA; Uncharacterized protein
STRING	XP_004166397.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10581	30	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	2e-82	related to AP2.7

Link Out ? help Back to Top
Phytozome	Cucsa.065640.1
Entrez Gene	101211008

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]