PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.059580.1
Common NameCsa_3G088430, LOC101220471
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 439aa    MW: 48229 Da    PI: 6.9146
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.059580.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.86.2e-063253631154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Cucsa.059580.1 325 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 363
                     5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.576314363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.78E-7324368No hitNo description
SuperFamilySSF474591.31E-11324378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0037325369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-9328370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MAEEFQSSGN WWEAASRISP SSSSITTFVD HSDSAAAASD PNLHIMGLGL DWNQPLFRGG  60
GEKAAEGSFR SMLQPDNMNL NMEETGQQQQ QQQQEQQQQQ IQWMRSEKLY SGESPATDFK  120
PINRGFSLDH HHHHHHHHHQ AQPQFSSPSH YSSGDSAVTS YPIDTNANLY GNSATLLQGL  180
LAAGGEQQQQ QQQQISMGMN FPYNSHFGMN SGELMTGGAS WSPSKVPPYL RNSPPKAGAG  240
GNPHSQLQFS NNTAFWNASD MKEVRPSYFA PSYNAAAGFT EKSKNISEVG DSVTTKKSGN  300
DNNQQSAAAK RPRNETPSPL PAFKVRKEKM GDRITALQQL VSPFGKTDTA SVLSEAIEYI  360
KFLHEQVSVL STPYLKSGAV VQQQHQQQRN EKSVKEGEGG KQDLRSRGLC LVPVSSTFPV  420
THETTVDFWT PTFGGTFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818580.0LN681858.1 Cucumis melo genomic scaffold, anchoredscaffold00028.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004151277.20.0PREDICTED: transcription factor bHLH123 isoform X1
TrEMBLA0A0A0L5640.0A0A0A0L564_CUCSA; Uncharacterized protein
STRINGXP_004151277.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-65bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]