PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.058710.1

Common Name

Csa_4G615240, LOC101205993

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 551aa MW: 60342.6 Da PI: 6.6727

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.058710.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.8	1.4e-16	355	401	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRR+riN+++ L+el+P++ K +Ka++L +A+eY+ksLq Cucsa.058710.1 355 VHNLSERRRRERINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 401 6***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.2E-21	348	415	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.59	351	400	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.9E-14	355	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-20	355	409	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-18	357	406	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.16E-9	365	405	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence Send to blast
MNYCFPDWNF EGDIPPAKKS MGPEHDDLVE LLWRNGQVVL QSQKARKSSL IANEVRQFQK 60 QNQPLYRSNV SCGNSSNLIQ DDETVSWIQD PLDDSFEKEF CSNFFSELPP ADPIEIVKQP 120 IKHFQDDKQT RFGAFDTATH VTFGNFVKKN SKPPASLAEF PMNTMPPPRF QFQDSSRQNK 180 DLGDLGKLVN FSQVPVPPLK GDLGSSNGGR ESGNLIQGEG RDCSGMTVGS SHCGSNQVPN 240 PNDLDLSRVS TSGFGNAGLS AGFSKEDNRK MVAQGERDKT ETMDPTATSS SGGSGSSMDR 300 SRTIGQSTGG NGNKRKGRDG EESECQSETA ELESAEGNKT APRSGSSRRT RAAEVHNLSE 360 RRRRERINEK MKALQELIPH CNKTDKASML DEAIEYLKSL QLQLQVMWMG SGMAPMMFPG 420 VQHYMSRVAM GMGMAQPSMP SIHNPMQLPR VPIVDQSVSV APTPNQPMMC QPQMFNPMNY 480 QNQMQNPALQ EQYARLMGFH HMQPTSQPIN VFRFCPSAVL QSQPAAAPGP ASGPTAGGSI 540 TNDIVNGNLG *

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence Send to blast

MNYCFPDWNF EGDIPPAKKS MGPEHDDLVE LLWRNGQVVL QSQKARKSSL IANEVRQFQK  60
QNQPLYRSNV SCGNSSNLIQ DDETVSWIQD PLDDSFEKEF CSNFFSELPP ADPIEIVKQP  120
IKHFQDDKQT RFGAFDTATH VTFGNFVKKN SKPPASLAEF PMNTMPPPRF QFQDSSRQNK  180
DLGDLGKLVN FSQVPVPPLK GDLGSSNGGR ESGNLIQGEG RDCSGMTVGS SHCGSNQVPN  240
PNDLDLSRVS TSGFGNAGLS AGFSKEDNRK MVAQGERDKT ETMDPTATSS SGGSGSSMDR  300
SRTIGQSTGG NGNKRKGRDG EESECQSETA ELESAEGNKT APRSGSSRRT RAAEVHNLSE  360
RRRRERINEK MKALQELIPH CNKTDKASML DEAIEYLKSL QLQLQVMWMG SGMAPMMFPG  420
VQHYMSRVAM GMGMAQPSMP SIHNPMQLPR VPIVDQSVSV APTPNQPMMC QPQMFNPMNY  480
QNQMQNPALQ EQYARLMGFH HMQPTSQPIN VFRFCPSAVL QSQPAAAPGP ASGPTAGGSI  540
TNDIVNGNLG *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	359	364	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681864	0.0	LN681864.1 Cucumis melo genomic scaffold, anchoredscaffold00092.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011653988.1	0.0	PREDICTED: transcription factor PIF5-like
Refseq	XP_011653989.1	0.0	PREDICTED: transcription factor PIF5-like
TrEMBL	A0A0A0KZR2	0.0	A0A0A0KZR2_CUCSA; Uncharacterized protein
STRING	XP_004162571.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8146	29	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43010.2	2e-46	phytochrome interacting factor 4

Link Out ? help Back to Top
Phytozome	Cucsa.058710.1
Entrez Gene	101205993

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]