PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.051690.1
Common NameCsa_6G294440, LOC101211039
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-YC
Protein Properties Length: 223aa    MW: 24933.2 Da    PI: 10.2231
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.051690.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC47.24.9e-151152041099
           NF-YC  10 iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                      e++++ k  ++P+ rikki++ ++   +i  ea  l+ ka e+f++++   ++  + + ++++l    ++++v++ + +dfl d vp++
  Cucsa.051690.1 115 AEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEK 204
                     56777888899***********9999999**********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.43E-1793197IPR009072Histone-fold
PfamPF008085.9E-16125188IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.1E-23126203IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MASSKKSSTE AKSKEVGTSK PSPKAKTHNN ARNSDKDISK KKKKKKKISI SISTNNGSVK  60
DNHALAVSAP GASASEDADA ADEDKAETTS RKSNTSKSKK VKRNHAKEED NRYAAEEEAE  120
EKIYKFPMHR IKKIMRDENS DLRINQEALF LVNKASEMFL VQFCKDAYAC CAQDRKKSLA  180
YKHLSSVVSK RKRYDFLSDF VPEKLKFEDA LKERSMAESG KD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14046KKKKKKK
2174192RKKSLAYKHLSSVVSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819220.0LN681922.1 Cucumis melo genomic scaffold, anchoredscaffold00082.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149539.21e-158PREDICTED: chromatin accessibility complex protein 1
TrEMBLA0A0A0KCQ21e-157A0A0A0KCQ2_CUCSA; Uncharacterized protein
STRINGXP_004170032.11e-158(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120163031
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.14e-33nuclear factor Y, subunit C10
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]