PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.050160.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 455aa    MW: 50695.2 Da    PI: 9.2093
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.050160.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407.1e-13354399655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el P      +k  s a++Le+AveYIk Lq
  Cucsa.050160.1 354 SIAERMRRTRISERIKKLQELFPDM----DKQTSTADMLELAVEYIKGLQ 399
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.24348398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-14351408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.85E-11352403No hitNo description
Gene3DG3DSA:4.10.280.104.0E-13353409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-12354404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-10354399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MSLLYSTNFK FSNDEMKKYP DFMDCDSTNN HHSQQEHNNS GGLMRYCSAP TSLFASLVDG  60
TEGFNSSNNG GGTREDYRFI RSSSPEVEVI LSRFMASCNG KFDSGSGERT VKEETGEPVQ  120
QQNGFCNQPS SMVNTRSVDA GGRAPVGNSY GVMNSSDFDN SMQSQLGARN CSNLFRQSSS  180
PAGFFSHLIA ENGNTTREVD KFGTCNRKDV DAAYPSTRIG SQMNLSGHSF GSNHMPPIAE  240
EENKSIGIVG SSRHRQKANS GDRLQTDDFL NSSWDNSAMR DTKRGRDNNG RAFATSIVLE  300
TQNADSGNNI RGLAHHLSLP ISFNKDPVEK FLRFQEPVPH QIRAKRGCAT HPRSIAERMR  360
RTRISERIKK LQELFPDMDK QTSTADMLEL AVEYIKGLQR QVKVTSKSNL KFIKSHEDPA  420
NTFYSQESLF FSCRLSQIRK RNALAHVRVN NKKP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818040.0LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659461.10.0PREDICTED: transcription factor bHLH130 isoform X2
TrEMBLA0A0A0K9U60.0A0A0A0K9U6_CUCSA; Uncharacterized protein
STRINGXP_004167982.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40053359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-50bHLH family protein