PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NF-YA

Protein Properties

Length: 203aa MW: 22530.8 Da PI: 8.838

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.048230.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.9	3e-32	109	165	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k ksrkpylheSRh hAlrR+Rg+gGrF Cucsa.048230.1 109 EEPVFVNAKQYHGILRRRQSRAKAESENKA-LKSRKPYLHESRHLHALRRARGCGGRF 165 69*************************9.9***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	4.2E-35	107	168	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.843	108	168	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.8E-27	110	165	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.0E-23	111	133	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	113	133	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.0E-23	142	165	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MTSSVHDYSD NGEADEQRKY SESQNHSSSV INGLNQSTPN QYVASPQVGA GHSMVPPAYP 60 YPDPYYRSIF TPYDAQPYPP QPYGGQPMVH LQLMGIQQAG VPLPTDAVEE PVFVNAKQYH 120 GILRRRQSRA KAESENKALK SRKPYLHESR HLHALRRARG CGGRFLKSNK NENHQNEVAS 180 GDKSQPNINL NSDRSDLASS EN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-20	108	166	1	59	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	5e-87	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	5e-87	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004134622.1	1e-148	PREDICTED: nuclear transcription factor Y subunit A-7
Refseq	XP_011658320.1	1e-148	PREDICTED: nuclear transcription factor Y subunit A-7
Refseq	XP_011658321.1	1e-148	PREDICTED: nuclear transcription factor Y subunit A-7
Swissprot	Q84JP1	2e-68	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A0A0KIV0	1e-147	A0A0A0KIV0_CUCSA; Uncharacterized protein
STRING	XP_004134622.1	1e-148	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5379	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	3e-56	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Cucsa.048230.1
Entrez Gene	101205549

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]