 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cucsa.047860.3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
| Family |
TCP |
| Protein Properties |
Length: 454aa MW: 49155.2 Da PI: 9.2429 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.047860.3 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 115.1 | 9.3e-36 | 86 | 235 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssasec...eae 76
g+kdrhsk+ T++g+RdRRvRls+ +a++f+dLqd+LGf ++sk++eWL+++a aikel+++ + +
Cucsa.047860.3 86 SGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQDRLGFEQPSKAVEWLIKAAADAIKELPSLnasfpetpkqlsgekisV------TdrpGPL 174
689*************************************************************665554443333222210......1222222 PP
TCP 77 sssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmrikn 134
+s++++ +s+ + + +++a+s++s++s+ s l+l++ r kar+ra+er ++++ +++
Cucsa.047860.3 175 DSVEQK-HSQLHVSLSKSACSSNSETSKGSGLSLSRsevrVNRLKARERAKERAQKEKEKEQ 235
222222.2333355555567777777777777777753335669999999996655554443 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009637 | Biological Process | response to blue light |
| GO:0009965 | Biological Process | leaf morphogenesis |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0045962 | Biological Process | positive regulation of development, heterochronic |
| GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription |
| GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
| Sequence ? help Back to Top |
| Protein Sequence Length: 454 aa
Download sequence Send
to blast |
MEVVDNIQEQ PRKFPRLANG RSSDSNEIGL KGVENIHTGD EKDKESKRDG GITAGVGGGG 60
LGGADDETNR LRGWHHSRII RVSRASGGKD RHSKVWTSKG LRDRRVRLSV ATAIQFYDLQ 120
DRLGFEQPSK AVEWLIKAAA DAIKELPSLN ASFPETPKQL SGEKISVTDR PGPLDSVEQK 180
HSQLHVSLSK SACSSNSETS KGSGLSLSRS EVRVNRLKAR ERAKERAQKE KEKEQDSSRI 240
TDHNLSSMTR NSSFTELLAG GAASVSAHRD AGVAAERQWQ SSTVAMDYFS SGILEPSTSR 300
THHSSGFSDQ MNLGTSLPQT MSSTPLFSSV STGDSNAEQL HQFSFVHDGN IVPVATTQPG 360
GGNDYSLNFT ISSNLPGYYR GTLQSNSSLL PHLQRFSPVD GSNLPFLFGA ATSAAPQLEN 420
HNHYQFSPAF DGRLQLCYGG GNRQSEQKGK GKD*
|
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT4G18390.2 | 2e-71 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
