PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.046530.1

Common Name

Csa_6G518170, LOC101222614

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 201aa MW: 23130 Da PI: 9.0191

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.046530.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	99.7	4.2e-31	32	178	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 lp+G++F+P+d++++ e+L++kv+++k + + +i ++d i++++P+ Lp ++++ +fF+++ k+y++g+rk+r+++ Cucsa.046530.1 32 LPAGVKFDPSDQQIL-EHLEAKVKEDKqklhplI---HhFILTLDgddgICYTHPQYLP-GMRKDGGVRHFFHRSPKAYTSGTRKRRKVRtdeee 121 799********99.99**9995554331...132333333445******.556666688**************74434554 PP NAM 80 ..sgyWkatgkdkevlsk....kgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v + +++++g kk+Lv+y g ++k++kt+Wvmh+y+l Cucsa.046530.1 122 gtDTRWHKTGKTRAVSDGsggsDSRVMGFKKILVLYsnYGYQKKPRKTNWVMHQYHL 178 44677*******9887777788******5557999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.92E-33	25	197	IPR003441	NAC domain
PROSITE profile	PS51005	30.345	32	197	IPR003441	NAC domain
Pfam	PF02365	2.0E-15	33	178	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MEAYGSIMCP SCAYPLEIDE VNRSLVEDWG KLPAGVKFDP SDQQILEHLE AKVKEDKQKL 60 HPLIHHFILT LDGDDGICYT HPQYLPGMRK DGGVRHFFHR SPKAYTSGTR KRRKVRTDEE 120 EGTDTRWHKT GKTRAVSDGS GGSDSRVMGF KKILVLYSNY GYQKKPRKTN WVMHQYHLGV 180 TEEEKDGQWV ASKVFFQLQP X

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	1e-119	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	1e-119	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004134944.2	1e-149	PREDICTED: NAC domain-containing protein 8-like
Swissprot	O49459	1e-86	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A0A0KLJ8	1e-148	A0A0A0KLJ8_CUCSA; NAC domain-containing protein 21/22
STRING	XP_004168542.1	1e-149	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	5e-88	NAC domain containing protein 73

Link Out ? help Back to Top
Phytozome	Cucsa.046530.1
Entrez Gene	101222614

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]