PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.045980.1 | ||||||||
Common Name | Csa_6G517080, LOC101209415 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 907aa MW: 100242 Da PI: 7.4576 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.5 | 1.2e-18 | 349 | 448 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k l+ sd+++ grlvlpkk+ae++ +++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++ + e++ Cucsa.045980.1 349 FEKMLSASDAGRIGRLVLPKKCAEAYfpSISQPEGLPLKVQDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLE-PEGK 441 89**************************666677788***************9989999999***9.********************766.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ Cucsa.045980.1 442 LVMGFRK 448 7777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS01359 | 0 | 48 | 105 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:2.40.330.10 | 3.5E-30 | 345 | 452 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.58E-19 | 346 | 448 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.42E-21 | 347 | 448 | No hit | No description |
PROSITE profile | PS50863 | 11.35 | 349 | 450 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-20 | 349 | 450 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-15 | 349 | 448 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.138 | 582 | 632 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.9E-11 | 587 | 629 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 907 aa Download sequence Send to blast |
MSSALTTASS SSSPLSSKSC YNSDCKELRP DRSRKGWRLR TGDFAELCDR CASAYEEGRF 60 CETFHLNASG WRCCESCGKR VHCGCIVSAH AFTLLDPGGI ECMTCARKNV ILPLNPAWPP 120 SLLFHSALPD RLKELSVKNW SQLAGSGPVP WRQAPSMFNS SLPSGELHHR APYEVDISAA 180 LNKLNTSERL PVSLEKRKNE DFSERFLNGS LKPCGQDLCE NGTAGGIKCD DKPSSCSNMP 240 KQSSFVKEDS STMQYGLNIP YAPPNEPSAR GRISGTHLRP TPLSSLPKQI HTNLQNGADS 300 SNETQLRNGR PRGESRGKNY LLPRYWPRFT DQELQQISVD SNSVITPLFE KMLSASDAGR 360 IGRLVLPKKC AEAYFPSISQ PEGLPLKVQD AKGKEWIFQF RFWPNNNSRM YVLEGVTPCI 420 QSMQLQAGDT VTFSRLEPEG KLVMGFRKAS ATADQENETN KTKNGAPVHG DVSNIKVKAE 480 LADPNSWTKV DKSGYIAKEV LGAKPSISRK RKNSTLGSKS KRLRIDNEDM IELKITWEEA 540 QGLLRPPPNQ VPNILVIEGF EFEAYEEAPV LGKPSIIPPD NTGERIQWTQ CEDCLKWRKL 600 PASALLPSKW TCSDNSWEPE RSFCSAPQEL STEQLEELLS PGNSVAPVKK MKAAKLEPDN 660 VEALEGLDTL ANLAILGEGE ASQTPGQATT KHPRHRPGCS CIVCIQPPSG KGPKHKQTCT 720 CNVCLTVKRR FRTLMLRREK KQFEKEAETM RQRHKFQDEM FPDRSMDEES LTCSNTSTSK 780 LMEEGKMNDG SDEDPNRNKP STSPFKGQID LNMQPEREEE LSPGSDSGSM MKMLQDTGDR 840 FLEQQRSNSG GTRSSSSDPL EPGGEREHKG ESSSNVIDLS SNNLDADKDH PATLSLNPSA 900 SMSTTG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 7e-64 | 327 | 456 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011658197.1 | 0.0 | PREDICTED: B3 domain-containing protein Os07g0563300 isoform X1 | ||||
Swissprot | Q0D5G4 | 0.0 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A0A0KHK1 | 0.0 | A0A0A0KHK1_CUCSA; Uncharacterized protein | ||||
STRING | XP_004155579.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7738 | 31 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-155 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.045980.1 |
Entrez Gene | 101209415 |
Publications ? help Back to Top | |||
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