PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.045680.1
Common NameCsa_6G516730, LOC105435958
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 405aa    MW: 44081.6 Da    PI: 5.3342
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.045680.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.99.9e-052993311754
                     HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++   L++l+ +      +K + a++L +A+eYIk L
  Cucsa.045680.1 299 GDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKFL 331
                     55666677777776.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.668282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.43E-5292336No hitNo description
Gene3DG3DSA:4.10.280.106.5E-8292343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-11292346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MAEDFQAPVC GDNWWNSSRS MLVAVGGLSP CSVGIADLSW PPQPPSAATD SVNNNSSMLF  60
QDYSTFQMMG FALSSSTTSE HWNQSQDLLN SNGIPTNFSS ENGLKQGNDG DDYLNCSSTN  120
TTNCQGGLFP VESSLYGYSS PSTKLLQTNL YEDDNSDPHS LFNSTPSITT NSTTFPTNIN  180
PPNHLSLSST PSFSSNYLVK PSLPNPQPHL QFTNNTPFWN ASSSNSIPQG IASLLEDKNN  240
PKSQNNTLAF KSVNEDGQDQ VKKGDKNSAI TTEPTVFKRP RIETPSPLPT FKVRKEKLGD  300
RVTALQQLVS PFGKTDTASV LHEAIEYIKF LHDQVSVLST PYMKSNNGIT PVQHQQVSEK  360
ANHDSPKQDL KSRGLCLVPI SSTFPVTNAT TTDFWTPTFG GTFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011658177.10.0PREDICTED: transcription factor bHLH112-like isoform X1
TrEMBLA0A0A0KHH20.0A0A0A0KHH2_CUCSA; Uncharacterized protein
STRINGXP_008439935.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.35e-58bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]