PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GATA

Protein Properties

Length: 245aa MW: 27798.6 Da PI: 7.1423

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.043350.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	59.5	4.4e-19	167	200	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+Cg+ kTp+WR gp g k+LCnaCG+++++ + Cucsa.043350.1 167 CSHCGVQKTPQWRAGPLGAKSLCNACGVRFKSGR 200 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	2.1E-15	161	215	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.308	161	197	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.4E-14	164	198	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	4.56E-14	164	224	No hit	No description
CDD	cd00202	1.24E-13	166	215	No hit	No description
Pfam	PF00320	4.7E-17	167	200	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	167	192	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MDIESAFKST PKLLFDDFWS SNLQNASSPS SDHIFVDQFL NFSDEEQQED EEKNNHSSVS 60 PPLQLQQVHH DTDQNSNHSS TNSSEDDFWS ITSTDFEDLD WLSHLVADST QEEYSAPTPS 120 VFLTHKPRNP LPNFHSYLNT PFPSKPRTKR PKISARGSGR VQAGRRCSHC GVQKTPQWRA 180 GPLGAKSLCN ACGVRFKSGR LFPEYRPACS PTFSNELHSN HHRKVLEMRR KKERERPQSG 240 MDLV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011658035.1	1e-161	PREDICTED: GATA transcription factor 7-like
Swissprot	O65515	2e-44	GATA7_ARATH; GATA transcription factor 7
TrEMBL	A0A0A0KJA5	1e-159	A0A0A0KJA5_CUCSA; GATA transcription factor
STRING	XP_008440788.1	1e-146	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1108	34	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36240.1	1e-46	GATA transcription factor 7

Link Out ? help Back to Top
Phytozome	Cucsa.043350.1
Entrez Gene	105435937

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]