PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.043160.1
Common NameCsa_6G504510, LOC101208178
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 357aa    MW: 39593.4 Da    PI: 8.3599
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.043160.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.10.000182602971254
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R +++ ++++ L++l+ +      +K + +++L++A+ YI+ L
  Cucsa.043160.1 260 RKEKLGDRISALQRLVAPF-----GKTDTSSVLTEAIGYIQFL 297
                     7778899*********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.471248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-10258310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.74E-5258302No hitNo description
Gene3DG3DSA:4.10.280.109.3E-8262306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MESANLQHQL QELFVGYSSL VSAPRTQPIA THECSSPNIL LEGNSYNNPY LVEQSLQCSS  60
RDNENDQNVW FNFSSTYQQQ QPNEQQQLSA LYSSIQSPAS YGVLPGISAG SNTNYYNNNL  120
FSSSLRNNNN NNHNSSSTST LDLLSSSSFS STMGYNLHAV DRHHHLDFLS TPNYNSSAFN  180
KNRALFGYAH QQQQHHHHHV QDSINNNNSP SNSSNKTSSS SVARAKRPMN SMSEPKKSNN  240
PESKKSCSTS RTSCPPLKVR KEKLGDRISA LQRLVAPFGK TDTSSVLTEA IGYIQFLHDQ  300
VETLSMPYLG SSQSKPYQKQ QPGSIQEEGT KPRQDLRSRG LCLMPLSCAS FIHGYD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150000.10.0PREDICTED: transcription factor bHLH110-like isoform X1
TrEMBLA0A0A0KGK30.0A0A0A0KGK3_CUCSA; Uncharacterized protein
STRINGXP_004170476.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40453254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.14e-30bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]