PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.041590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 163aa MW: 17972 Da PI: 6.8831 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.4 | 5.6e-16 | 4 | 52 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykG+r ++ g+Wv+eIr+p++ + r++lg++ t+e+Aa+a++ a+++l+g Cucsa.041590.1 4 HYKGIR-CR-GGKWVSEIREPRK---TNRIWLGTYPTPEMAAAAYDVAALALKG 52 69***9.55.7*********854...49***********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.31E-15 | 4 | 62 | No hit | No description |
SuperFamily | SSF54171 | 2.81E-18 | 4 | 62 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.2E-27 | 4 | 66 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.467 | 4 | 60 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-9 | 4 | 52 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-26 | 4 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
RHDHYKGIRC RGGKWVSEIR EPRKTNRIWL GTYPTPEMAA AAYDVAALAL KGCNAVLNFP 60 NSVAFYPVPA STSPTDIRIA AAAAAASKKV DDQGENSYHN SHYQSPPTNE FVDEEALFGM 120 PNLLHDMAEG MLLSPPRMNS SPSRHDYYSW NSSGDGNLWS YH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-13 | 2 | 62 | 12 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681860 | 0.0 | LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008448976.1 | 1e-100 | PREDICTED: ethylene-responsive transcription factor ERF026-like | ||||
Swissprot | Q9FJ90 | 1e-46 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A1S3BKD7 | 1e-98 | A0A1S3BKD7_CUCME; ethylene-responsive transcription factor ERF026-like | ||||
STRING | XP_004171678.1 | 1e-119 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF562 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 3e-45 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.041590.1 |
Publications ? help Back to Top | |||
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