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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cucsa.041490.1 |
| Common Name | LOC101213853 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
GRAS |
| Protein Properties |
Length: 386aa MW: 44488.9 Da PI: 7.0512 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.041490.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 383.8 | 2.1e-117 | 15 | 384 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95
+++lL++cA+++s++d+ a++lL+ ls ++sp+gd++qRl +yf L++ l + s+ ++++ + + ++ + + +++++P+++f+h
Cucsa.041490.1 15 MRQLLIRCAHFISQSDFISAHHLLSILSSNSSPYGDSTQRLLHYFSSSLSHLLPS--SNYNSSFHHHHH---DIEKIQSCYLSLNQITPFIRFTH 104
589**************************************************99..333333333333...35555555556************ PP
GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl...vakrle 187
ltaNqaIle +e++ ++H++Dfdi++G+QWp+L+qaLa+R ++p+lRiT+ g + + l++tg+rL+kfA++lg++f+f++l + ++ +
Cucsa.041490.1 105 LTANQAILEGIEESGMIHVLDFDIMHGVQWPPLMQALADR-FPSPMLRITATGV----DLNFLHKTGDRLSKFAQSLGLRFQFHPLlllHDRDHH 194
***************************************9.788**********....9**************************9885556899 PP
GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvs..leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
+ + +L + p+EalaVn+vl lhr + s+ +++ + +L+ +k l+Pkvv+++e+ea+ n++ F++rf+eal++y+ lfdslea+lp++s+
Cucsa.041490.1 195 RVIPAALTLFPDEALAVNCVLYLHRYGQMSGLwlMKDDVRVLLNKIKALNPKVVTIAEKEANFNHPLFMQRFVEALNHYTLLFDSLEATLPPNSR 289
99************************998875225558899****************************************************** PP
GRAS 281 erikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
er vE++++grei ++v+ e ++ +++ e++e+W+ +l++ GF+++pls +a +qaklllr ++ s+gy+++ ++sl+lgW+++pL+svS+W
Cucsa.041490.1 290 ERLAVEQVWFGREINDIVSGEVNKkKQHYAERYESWETMLKSLGFSNIPLSPFALSQAKLLLRLHYpSEGYHLQILHDSLFLGWQNQPLFSVSSW 384
********************99883555679**************************************************************** PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 386 aa
Download sequence Send
to blast |
HQQEPEQQED HCLQMRQLLI RCAHFISQSD FISAHHLLSI LSSNSSPYGD STQRLLHYFS 60
SSLSHLLPSS NYNSSFHHHH HDIEKIQSCY LSLNQITPFI RFTHLTANQA ILEGIEESGM 120
IHVLDFDIMH GVQWPPLMQA LADRFPSPML RITATGVDLN FLHKTGDRLS KFAQSLGLRF 180
QFHPLLLLHD RDHHRVIPAA LTLFPDEALA VNCVLYLHRY GQMSGLWLMK DDVRVLLNKI 240
KALNPKVVTI AEKEANFNHP LFMQRFVEAL NHYTLLFDSL EATLPPNSRE RLAVEQVWFG 300
REINDIVSGE VNKKKQHYAE RYESWETMLK SLGFSNIPLS PFALSQAKLL LRLHYPSEGY 360
HLQILHDSLF LGWQNQPLFS VSSWH*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
