PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GATA

Protein Properties

Length: 323aa MW: 35184 Da PI: 5.7947

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.038810.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	53.2	4.1e-17	219	253	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C + kTp+WR gp g+ktLCnaCG++y++ +l Cucsa.038810.1 219 CLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 253 99*****************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	3.6E-72	16	303	IPR016679	Transcription factor, GATA, plant
SMART	SM00401	1.0E-15	213	263	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.44	213	249	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	5.2E-14	214	251	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	1.05E-14	215	277	No hit	No description
CDD	cd00202	2.28E-12	218	265	No hit	No description
PROSITE pattern	PS00344	0	219	244	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	7.7E-15	219	253	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MELPGYLVGG YYGTGAPQFS PDNKKSTAEH FPLDEYLLDF SNEDVAMHSG FFDNVAGNCS 60 DSSTLTAIDS CNSSVSGGDN QLLAKFESGS FCEAQFSSEL CIPCDDLAEL EWLSNFVEES 120 FSTEEIDKDF PAIPFLSGGI SSAATPETSS SSGATAFGYG NAKTTTFFHS EALTLPGKAR 180 SKRSRATPCD WSTRLLQATA PEKTEGTMAK PETTSGRKCL HCAAEKTPQW RTGPMGPKTL 240 CNACGVRYKS GRLVPEYRPA SSPTFVSTKH SNSHRKVMEL RRQKEMQHQE QFVSQSSIFS 300 RSNGCDEYLI HRHNGGDFSH MM*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681827	0.0	LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008447537.1	0.0	PREDICTED: GATA transcription factor 4-like
Swissprot	O82632	4e-72	GATA9_ARATH; GATA transcription factor 9
TrEMBL	A0A1S3BI99	0.0	A0A1S3BI99_CUCME; GATA transcription factor
STRING	XP_004172012.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1364	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32890.1	3e-71	GATA transcription factor 9

Link Out ? help Back to Top
Phytozome	Cucsa.038810.1
Entrez Gene	101206645

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]