PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.013980.1 | ||||||||
Common Name | Csa_5G352590, LOC101216268 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 770aa MW: 85804.6 Da PI: 4.4886 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.8 | 1.4e-09 | 612 | 654 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r +W++ + e++++av+q+G++ + I + ++ g+t+ q+k+++ Cucsa.013980.1 612 RTKWSKSDTERFYEAVRQFGTD-FCMIQQLFP-GKTRRQIKLKFK 654 789*******************.*********.*********985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 4.6E-27 | 605 | 689 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-6 | 609 | 655 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.0E-8 | 611 | 659 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.89E-7 | 614 | 654 | No hit | No description |
SuperFamily | SSF46689 | 4.41E-10 | 614 | 661 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 770 aa Download sequence Send to blast |
MDPFDDIFSE RVVTARAGVR FQPKTKPRPK KQTLAPQLSA KSQDIKGTIL DAKSCPDDKG 60 NTKSIKSSSQ LPVTEEKRES EDGLLSGTAR SDFIGCSLPT SVESDKVVDS TQFDLDCCGS 120 LLPSGSTIED GVTDAIDFTT SPSGPVGVKK LTDDNKNSEL LTYSHPSASS AHEAMTVDQG 180 GIGSIQSEDV HSIDGKIAGQ NIDLFYELEC LDDFHNQPQN EDDPSSLKQA TISNEGGDLD 240 KQRLEIEECG AVANVTMDTL SSVTTTPSER SACKYIPKPK MRTAGDACTQ ISQPEISNML 300 PPSPQVISCD TNGMNEASIG THSDGVLNDS SINFDGYAPV NQDTETPVNV ESFTFDSYGD 360 ILVDDFNSDD QDAMLREENG KNDEEEPSRQ SNVSQQQKIC PSVGEEIEHS KTSRKLRKKV 420 SHQLDEPEDG VDVNRKFPNE PSSNSGMHGN GYNKNENPKG GQGRKTSTKS SKPSSENEKP 480 TRKRKEANKA VPDLQAEKRP KKFSHSTRRN RRQVNKVLLE TPEDDIDFQK ISFRDLIIYH 540 EHKEKLEKKV ASTRKSETNQ RTDTSAEEIY NDGEENLASE QGKGTDDDEM PDVVDMTSAY 600 FNYQSFMDKT PRTKWSKSDT ERFYEAVRQF GTDFCMIQQL FPGKTRRQIK LKFKSEERHH 660 PFRLSDAITN RAKDHSQFLS LIEQLKEAAK AKHESNQDEL TENTGDEEQP ELSPQTNEEE 720 VEQPEGVEET EKKEFVGGEI HSPLKGEGSD DDDDDDDDPN RWDEYKFDY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 1e-166 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 1e-166 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011655158.1 | 0.0 | PREDICTED: uncharacterized protein LOC101216268 | ||||
TrEMBL | A0A0A0KPZ2 | 0.0 | A0A0A0KPZ2_CUCSA; Uncharacterized protein | ||||
STRING | XP_004157041.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3666 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39160.1 | 2e-38 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.013980.1 |
Entrez Gene | 101216268 |
Publications ? help Back to Top | |||
---|---|---|---|
|