PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.013980.1
Common NameCsa_5G352590, LOC101216268
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 770aa    MW: 85804.6 Da    PI: 4.4886
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.013980.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.4e-09612654145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r +W++ + e++++av+q+G++ +  I + ++ g+t+ q+k+++ 
   Cucsa.013980.1 612 RTKWSKSDTERFYEAVRQFGTD-FCMIQQLFP-GKTRRQIKLKFK 654
                      789*******************.*********.*********985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159634.6E-27605689No hitNo description
Gene3DG3DSA:1.10.10.603.7E-6609655IPR009057Homeodomain-like
SMARTSM007179.0E-8611659IPR001005SANT/Myb domain
CDDcd001674.89E-7614654No hitNo description
SuperFamilySSF466894.41E-10614661IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MDPFDDIFSE RVVTARAGVR FQPKTKPRPK KQTLAPQLSA KSQDIKGTIL DAKSCPDDKG  60
NTKSIKSSSQ LPVTEEKRES EDGLLSGTAR SDFIGCSLPT SVESDKVVDS TQFDLDCCGS  120
LLPSGSTIED GVTDAIDFTT SPSGPVGVKK LTDDNKNSEL LTYSHPSASS AHEAMTVDQG  180
GIGSIQSEDV HSIDGKIAGQ NIDLFYELEC LDDFHNQPQN EDDPSSLKQA TISNEGGDLD  240
KQRLEIEECG AVANVTMDTL SSVTTTPSER SACKYIPKPK MRTAGDACTQ ISQPEISNML  300
PPSPQVISCD TNGMNEASIG THSDGVLNDS SINFDGYAPV NQDTETPVNV ESFTFDSYGD  360
ILVDDFNSDD QDAMLREENG KNDEEEPSRQ SNVSQQQKIC PSVGEEIEHS KTSRKLRKKV  420
SHQLDEPEDG VDVNRKFPNE PSSNSGMHGN GYNKNENPKG GQGRKTSTKS SKPSSENEKP  480
TRKRKEANKA VPDLQAEKRP KKFSHSTRRN RRQVNKVLLE TPEDDIDFQK ISFRDLIIYH  540
EHKEKLEKKV ASTRKSETNQ RTDTSAEEIY NDGEENLASE QGKGTDDDEM PDVVDMTSAY  600
FNYQSFMDKT PRTKWSKSDT ERFYEAVRQF GTDFCMIQQL FPGKTRRQIK LKFKSEERHH  660
PFRLSDAITN RAKDHSQFLS LIEQLKEAAK AKHESNQDEL TENTGDEEQP ELSPQTNEEE  720
VEQPEGVEET EKKEFVGGEI HSPLKGEGSD DDDDDDDDPN RWDEYKFDY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818951e-166LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132631e-166LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011655158.10.0PREDICTED: uncharacterized protein LOC101216268
TrEMBLA0A0A0KPZ20.0A0A0A0KPZ2_CUCSA; Uncharacterized protein
STRINGXP_004157041.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36662938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.12e-38MYB_related family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]