PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.012130.1
Common NameCsa_5G545560, LOC101209321
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 473aa    MW: 51958 Da    PI: 5.9936
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.012130.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-05123145123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+Cg+s+++ ++  +H  ++
  Cucsa.012130.1 123 FECPICGRSYRSEEEVSVHVDSC 145
                     89*****************8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.20.901.1E-92452No hitNo description
SMARTSM007340.0012122146IPR006642Zinc finger, Rad18-type putative
CDDcd092122.91E-20170266No hitNo description
SuperFamilySSF1435032.35E-17180255IPR018997PUB domain
PfamPF094092.4E-16182253IPR018997PUB domain
SMARTSM005801.9E-16183250IPR018997PUB domain
SuperFamilySSF542362.38E-14323436IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.901.1E-9340434No hitNo description
SMARTSM001660.0089349438IPR001012UBX domain
PROSITE profilePS5003311.565352436IPR001012UBX domain
PfamPF007891.2E-5353432IPR001012UBX domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MGDVKDKVKG FMKRFNNTLS SSSSTNFKGQ GRVLGSSSSG STSSMPTRPS ENPISKPKLV  60
SPPSNSSANS KPPVANSIAT GQNRSDPSNT SNPDRIPADG FDPFDSFITS GKRSGNGYSL  120
NVFECPICGR SYRSEEEVSV HVDSCVNDST AKGAEDPPTS DAEPRSELEA CIGTFLSGKP  180
TQGSLDIVLK LLRNIVREPE NSKFRKIRLS NPKIKEAIGE AVGGVELLEF VGFKLQEEDG  240
EMWATMEVPT EEQINLLCKV IDLIDQPKLE EQQKKASTAP DLIEPKKVDR QIRVFFAVPE  300
NIAAKIELPD SFYRLSVEEV KREAIMRKQK IAESQLLVPK SYKEKQAKAA RRKYTRTVIR  360
IQFPDGVVLQ GVFSPWEPTS ALYEFVSTAL KEPCLEFELI HPVGVKRRTI AHFPAEGEKS  420
KTLDDEELVP SALVKFRPIE TDSVVFTGLR NELLEIIEPL VSGSAVAPPT QV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ifs_A7e-1230343619146Tether containing UBX domain for GLUT4
5ifs_C7e-1230343619146Tether containing UBX domain for GLUT4
5ifw_A3e-1230743623146Tether containing UBX domain for GLUT4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFacilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269|PubMed:19176722, ECO:0000269|PubMed:23301616, ECO:0000269|Ref.8}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269|PubMed:19176722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011655442.10.0PREDICTED: UBX domain-containing protein 6
SwissprotQ9ZU930.0PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBLA0A0A0KUN70.0A0A0A0KUN7_CUCSA; Uncharacterized protein
STRINGXP_004162868.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89442529
Publications ? help Back to Top
  1. Suzuki T,Park H,Till EA,Lennarz WJ
    The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway.
    Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7
    [PMID:11587532]
  2. Rancour DM,Park S,Knight SD,Bednarek SY
    Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48.
    J. Biol. Chem., 2004. 279(52): p. 54264-74
    [PMID:15498773]
  3. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  4. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  5. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  6. Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC
    Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction.
    Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45
    [PMID:23301616]