PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa19g020370.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GRAS

Protein Properties

Length: 310aa MW: 34848.9 Da PI: 6.1034

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa19g020370.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	40.4	4.4e-13	145	228	2	86
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl...fse 86 ++lL cA a++s++ +++q++L+ lselas++gd+++Rla ++AL+++l++ s++++++ p + + s+e+ +++k+ f+e Csa19g020370.1 145 EQLLNPCALAITSRNSSRVQHYLCVLSELASSSGDANRRLADIGLRALQHHLSS--SSVSSSFwPDVTFA---SAEVKMFQKTllkFYE 228 689**************************************************9..77777773444444...4444444444334655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	1.5E-10	145	228	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MSLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI 60 QSYSQDLSAY VGCEATNLEV VTEAPFINLD PLPELQQPNN QSRKRSSDKL IEAQHVKRSA 120 RSKKKSNKSS EKSCKDGNKE ERWAEQLLNP CALAITSRNS SRVQHYLCVL SELASSSGDA 180 NRRLADIGLR ALQHHLSSSS VSSSFWPDVT FASAEVKMFQ KTLLKFYEIR RTSSIHVRIS 240 VVSDLTADIP FSVGRPASSY DSQLFGFARS LKINLQISVL DSVKYTYLVY YRRINQVSSF 300 VVIANTSLE*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa19g020370.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC237328	0.0	AC237328.1 Arabidopsis lyrata clone JGIFAFI-41L7, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010489817.1	1e-169	PREDICTED: scarecrow-like protein 29
Swissprot	Q9LRW3	1e-156	SCL29_ARATH; Scarecrow-like protein 29
TrEMBL	A0A178VGN4	1e-154	A0A178VGN4_ARATH; Uncharacterized protein
STRING	XP_010489817.1	1e-168	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10747	28	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13840.1	1e-145	GRAS family protein