PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa19g013490.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Trihelix

Protein Properties

Length: 475aa MW: 54793 Da PI: 7.8174

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa19g013490.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.9	1.6e-29	91	177	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea Csa19g013490.1 91 RWPRQETLMLLEVRSRLDRKFKESNQKGPLWDEVSRIMsEEHGYTRSGKKCREKFENLYKYYKKTKEGKAGR-RQDGKNYRFFRQLEA 177 8***********************************999*************************98.77888******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	5.8E-4	88	151	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.097	90	149	IPR017877	Myb-like domain
CDD	cd12203	6.28E-19	91	156	No hit	No description
Pfam	PF13837	9.3E-20	91	178	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MEDHHHQNHP QYGIAQPSPL HFSSDLFGFN LISAPDQHHR LHHMTDHEIS FLPRGIQGLT 60 VAGNISNAIV ASTSSTRGGF SGFTDGGGTG RWPRQETLML LEVRSRLDRK FKESNQKGPL 120 WDEVSRIMSE EHGYTRSGKK CREKFENLYK YYKKTKEGKA GRRQDGKNYR FFRQLEAIYG 180 ESKDSISCYD NTQFLMTNAL HDFHAPNIHH NAVPHHQKPL SNTQSLSISN NLNSSSELDL 240 TSYSEGNEST RGKRMNWKEK IKEYIGIHIE RLIEKQDFWL EKLMKTVEDK EHQRMVREEE 300 WKRDEAARID KERLFWTKER ERMEARDVAV IEALKYLTGK ASIRPNSSSP TERIHGNISD 360 QTMADEENKS KMEKKEVNKK RKETWSSHGG NHSRIKDSMM IYQNQETRIN DCSRDDEQGH 420 HEGYIPSNSK EGNPSCDIAM PASPTNCFPL LVGDGDQNSW EGYGLKLRKE DNPQ*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MEDHHHQNHP QYGIAQPSPL HFSSDLFGFN LISAPDQHHR LHHMTDHEIS FLPRGIQGLT  60
VAGNISNAIV ASTSSTRGGF SGFTDGGGTG RWPRQETLML LEVRSRLDRK FKESNQKGPL  120
WDEVSRIMSE EHGYTRSGKK CREKFENLYK YYKKTKEGKA GRRQDGKNYR FFRQLEAIYG  180
ESKDSISCYD NTQFLMTNAL HDFHAPNIHH NAVPHHQKPL SNTQSLSISN NLNSSSELDL  240
TSYSEGNEST RGKRMNWKEK IKEYIGIHIE RLIEKQDFWL EKLMKTVEDK EHQRMVREEE  300
WKRDEAARID KERLFWTKER ERMEARDVAV IEALKYLTGK ASIRPNSSSP TERIHGNISD  360
QTMADEENKS KMEKKEVNKK RKETWSSHGG NHSRIKDSMM IYQNQETRIN DCSRDDEQGH  420
HEGYIPSNSK EGNPSCDIAM PASPTNCFPL LVGDGDQNSW EGYGLKLRKE DNPQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa19g013490.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010486582.1	0.0	PREDICTED: trihelix transcription factor PTL-like
Swissprot	Q9LZS0	1e-128	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	R0I3S2	0.0	R0I3S2_9BRAS; Uncharacterized protein
STRING	XP_010486582.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2767	28	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10000.1	0.0	Trihelix family protein

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]