PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19476s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | G2-like | ||||||||
Protein Properties | Length: 53aa MW: 6110.09 Da PI: 12.2247 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 38.5 | 2.6e-12 | 28 | 51 | 2 | 25 |
G2-like 2 prlrWtpeLHerFveaveqLGGse 25 pr+rWt++LH++Fv+av+ LGG+e Csa19476s010.1 28 PRMRWTSTLHAHFVHAVQLLGGHE 51 9*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-8 | 26 | 51 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 53 aa Download sequence Send to blast |
MFQPQIYGRD FKRSSSSMVG LKRSIRAPRM RWTSTLHAHF VHAVQLLGGH ESI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19476s010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB013391 | 1e-68 | AB013391.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFO20. | |||
GenBank | CP002688 | 1e-68 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001119363.1 | 2e-30 | Homeodomain-like superfamily protein | ||||
Refseq | XP_006280924.1 | 3e-30 | probable transcription factor KAN4 isoform X1 | ||||
Refseq | XP_010481972.1 | 2e-30 | PREDICTED: probable transcription factor KAN4 | ||||
Refseq | XP_023644584.1 | 3e-30 | probable transcription factor KAN4 isoform X2 | ||||
Swissprot | Q9FJV5 | 3e-31 | KAN4_ARATH; Probable transcription factor KAN4 | ||||
TrEMBL | R0EX63 | 7e-29 | R0EX63_9BRAS; Uncharacterized protein | ||||
STRING | XP_006280924.1 | 1e-29 | (Capsella rubella) | ||||
STRING | XP_010481972.1 | 9e-30 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6572 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42630.2 | 5e-34 | G2-like family protein |
Publications ? help Back to Top | |||
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