PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g029850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 718aa MW: 81757.3 Da PI: 9.595 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.2 | 2.3e-11 | 309 | 354 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f+ Lr+llP+ +K +Ka++L A e ++sLq Csa18g029850.1 309 HMISERKRREKLNESFQALRSLLPPG-----TKKDKASVLAIAREQLSSLQ 354 8889********************97.....8*************999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.564 | 304 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-14 | 306 | 371 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.81E-9 | 306 | 358 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.6E-13 | 308 | 371 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.0E-9 | 309 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-12 | 310 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 718 aa Download sequence Send to blast |
MDAYYNEASQ EPPSSSSSSS SSSSSRCLAR SLLLEYRQSL IPLHNGHVPS MAFMNNLPYV 60 EIRQQEIQRL AYNDAQRLFY QEAKIQTVIF MGCRSGEIEL GMTYDAANMK IEESLREWFP 120 EDFSRNSSPV NSDYLRPPRH PSTSSSSLSP NQVSEYSSLL FPLIPKPSTT TDAVNAPAHP 180 LLAPINMIHQ QQQEPLFRNR EREEEAMTQA ILAVLRGSSS PPSPSSSPLR KGRATAFKRY 240 YCMISGGGRA RPQPSVRKQS MMKRAITFYN RLNIQRRERF VRENATMAAD GSGGSGGGGR 300 SLSTTQLHHM ISERKRREKL NESFQALRSL LPPGTKKDKA SVLAIAREQL SSLQGEISKL 360 LKRNRELEAK LAGEREIGND LQPDERFNVC IRHIPESTSR ERMLDLRVVL REDIIRVDDL 420 MLRLLEFLKQ INNVSLVSIE ARSRARDSSV VLVSLRLKIE KDKASVLAIA REQLSSLQGE 480 ISKLLKRNRE LEAKLAGERE IGNDLQPDER FNVCIRHIPE STSRERMLDL RVVLREDIIR 540 VDDLMLRLLE FLKQINNVSL VSIEARSRAR DSSVVLVSLR LKIEGEWDES AFQEAVRRRN 600 RELEAKLAGE REIGNDLQPD ERFNVCIRHI PESTSRERML DLRVVLREDI IRVDDLMLRL 660 LEFLKQINNV SLVSIEARSR ARDSSVVLVS LRLKIEGEWD ESAFQEAVRR VVADLAH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 312 | 317 | ERKRRE |
2 | 313 | 318 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g029850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB024035 | 0.0 | AB024035.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010483181.1 | 0.0 | PREDICTED: putative transcription factor bHLH041 | ||||
Swissprot | Q9LTS4 | 0.0 | BH041_ARATH; Putative transcription factor bHLH041 | ||||
TrEMBL | A0A1P8BAL1 | 0.0 | A0A1P8BAL1_ARATH; Basic helix-loop-helix (BHLH) DNA-binding family protein | ||||
STRING | XP_010483181.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7060 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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