PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g037850.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 459aa    MW: 51165.4 Da    PI: 6.3484
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g037850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.15.5e-06638335
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                       C+ ++e  + lfC+ +   lC  C ++ H 
  Csa17g037850.1  6 RAPCDFCGERAAVLFCRADTAKLCLPCDQHVHT 38
                    678******99******************9994 PP
2zf-B_box20.41.1e-064980334
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
                     ++C+++++++++  C++++  lC++C    H
  Csa17g037850.1 49 SQICDNCGNEPVSVRCFTDNFVLCQECDWDVH 80
                    689************************98777 PP
3CCT60.17.7e-21409453145
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                     R +a++RYk+Kr++R+++K+irYesRKa+A++R Rv+GrFvk++e
  Csa17g037850.1 409 RGNAMQRYKKKRNKRRYDKTIRYESRKARADTRLRVRGRFVKASE 453
                     7789**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.471451IPR000315B-box-type zinc finger
SMARTSM003361.4E-12451IPR000315B-box-type zinc finger
CDDcd000211.90E-7851No hitNo description
CDDcd000211.33E-65180No hitNo description
SMARTSM003361.95294IPR000315B-box-type zinc finger
PfamPF062036.1E-15409451IPR010402CCT domain
PROSITE profilePS5101714.436409451IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MGRSERAPCD FCGERAAVLF CRADTAKLCL PCDQHVHTAN LLSRKHVRSQ ICDNCGNEPV  60
SVRCFTDNFV LCQECDWDVH GSCSVSDAHV RSAVEGFSGC PSALELGALW GIDLEGGRKE  120
KEEEESQVPM MENFGMQLDS WVLGSDVVLE ELIVPSDTTF KKRGSSSSCG RYKQVLCKQL  180
EELLKNDIVV VGGGDDGDDD DDRVGDCDGD GEGIMVPEMP ERFEWGRDVE EIYGRELPQK  240
TSFTPLQWKD TNPSGGQSSQ VQIYLCFDCF SHGCCFVYSL CLVNLQIWDF NLGQSRGPED  300
TSRMEAAYVA KGAASFTINN FVDNMNETCS TNVKGVKRIC KDDYKRSTSG QVQPTTSESN  360
HHSITFGSEK ASKSSSNDLH FTKHIAGTSC KTTRLLATKA DLERLAQNRG NAMQRYKKKR  420
NKRRYDKTIR YESRKARADT RLRVRGRFVK ASEAPYPI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g037850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019095219.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15-like
SwissprotQ9C7E80.0COL15_ARATH; Zinc finger protein CONSTANS-LIKE 15
TrEMBLD7KCS10.0D7KCS1_ARALL; Zinc finger (B-box type) family protein
STRINGXP_010478156.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]