PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g028640.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARF
Protein Properties Length: 598aa    MW: 67719.7 Da    PI: 7.2681
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g028640.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.37.2e-24126227199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g l++pk+ a+e+      +++   +++   +d++g++W++k+++r++++r+++t+GW+ Fv  ++L +gD++vF   + ++
  Csa17g028640.1 126 FKKILTASDTSTHGGLSVPKRDATEClppldmSLP-VPTQEFLTKDLHGNEWRFKHSFRGTPRRHLITTGWSAFVTTKKLVAGDVLVFV--RGEN 217
                     89****************************97444.44458999*********************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+v+++r+
  Csa17g028640.1 218 GELRVGIRRA 227
                     99*****996 PP
2Auxin_resp97.51.9e-32252331183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++ k++F+vvY+Pr+  s+F+v+ +++++a+++k+ vG+Rf m+fe+ed+serr+ Gt++gv++++p +W++S+WrsL+
  Csa17g028640.1 252 AVHAFHRKCMFSVVYKPRS--SQFIVSHDNFLDAMNKKFNVGSRFTMQFEGEDFSERRYFGTIIGVNNFSP-HWKDSEWRSLQ 331
                     789***************6..9*************************************************.*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-38114239IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-32120249IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-23125226No hitNo description
PROSITE profilePS5086313.408126228IPR003340B3 DNA binding domain
PfamPF023622.2E-21126227IPR003340B3 DNA binding domain
SMARTSM010196.2E-24126228IPR003340B3 DNA binding domain
PfamPF065073.1E-28252331IPR010525Auxin response factor
PfamPF023091.3E-5493538IPR033389AUX/IAA domain
PROSITE profilePS5174525.756502583IPR000270PB1 domain
SuperFamilySSF542776.87E-12504578No hitNo description
PfamPF023096.1E-6545589IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MESGNVVNEQ PELSGIVDET KSYIYEQLWN LCAGPLCNLP KLGDKVYYFP QGHIEFVEAS  60
TREELNQIQQ NFDIPSKLQC HVIAIHRKVE KNTDQIYAEI TLMPDTTQVI IPTQNDSNDR  120
PKINFFKKIL TASDTSTHGG LSVPKRDATE CLPPLDMSLP VPTQEFLTKD LHGNEWRFKH  180
SFRGTPRRHL ITTGWSAFVT TKKLVAGDVL VFVRGENGEL RVGIRRAGHQ QGNTPSSLVS  240
TESMRHGVIV SAVHAFHRKC MFSVVYKPRS SQFIVSHDNF LDAMNKKFNV GSRFTMQFEG  300
EDFSERRYFG TIIGVNNFSP HWKDSEWRSL QVRWDEFVSF PRPNRVSPWE IEHLTPSSNV  360
IQSSLLKNKR SRHVNEIGSS SSHRLPPILI EGQEIGQPSM TSPMSIPQLS NRDAVEDAKK  420
PSNGIMSYSV PSMPDRYYNN DQMITPIKKN ITINVGGSCR LFGVTLTTPS EIKDPVEPND  480
SYQISDTSKL SQERSKQFNS IRSCTKVQMQ GVTIGRALDL SVLNGYDQLI HELDKLFDLK  540
GKLQTRNQWE IVFTDDEGDM MVVGDDPWPE FCNMVKKIFI LSKEEVNNLK SGTNISS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1252435419355Auxin response factor 1
4ldw_A1e-1252435419355Auxin response factor 1
4ldw_B1e-1252435419355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g028640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477432.10.0PREDICTED: putative auxin response factor 14 isoform X1
SwissprotQ9LQE80.0ARFN_ARATH; Putative auxin response factor 14
TrEMBLD7L9F70.0D7L9F7_ARALL; Auxin response factor
STRINGXP_010477432.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12276731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35540.10.0auxin response factor 14