PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g031370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | WRKY | ||||||||
Protein Properties | Length: 385aa MW: 42788.2 Da PI: 6.892 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 85.5 | 4.9e-27 | 204 | 263 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-S.SSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversa.edpkvveitYegeHnhe 59 +Dg++WrKYGqK+ k ++ pr+YYrC+++ +Cpv+k+v+r+ e+++++ +tYeg+H+h+ Csa16g031370.1 204 NDGCQWRKYGQKTAKTNPLPRAYYRCSMSsNCPVRKQVQRCGeEETSAFMTTYEGNHDHP 263 8***************************99**********96157889***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.0E-28 | 188 | 265 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.32E-24 | 198 | 265 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.202 | 198 | 265 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-32 | 203 | 264 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.6E-25 | 204 | 263 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MTKEETVSCS QPSDGVMGEP DKEEELDATK AKVEKVREEN EKLKLLLSTI LNNYNSLQMH 60 VSEVLRKQQG ASIELEVDRD QDKDNDFGVD ISLRLGRSSE QTISKKEEKV DKASDEKEER 120 SKKKRSSLGL GFQIQNCEDS TSKLDYHCRQ VKNVNAESKC VSSRKDAKTA RNENHQDVLE 180 EHEQTSLKKT RVSVKATCED PSINDGCQWR KYGQKTAKTN PLPRAYYRCS MSSNCPVRKQ 240 VQRCGEEETS AFMTTYEGNH DHPLPMEATH MAAGTSAAAS LLQSGSSSSS SSTSASLSYY 300 FPYHHFSIST TNAHPTVTLD LTRPNYTNQS PISSSSFSLN FSSSDPPPPS SQDHTLNFGG 360 LRTQAPLSTD SLMARYRTRL SGQQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-18 | 203 | 265 | 14 | 74 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g031370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010470983.1 | 0.0 | PREDICTED: probable WRKY transcription factor 36 | ||||
Swissprot | Q9CAR4 | 0.0 | WRK36_ARATH; Probable WRKY transcription factor 36 | ||||
TrEMBL | R0HY67 | 0.0 | R0HY67_9BRAS; Uncharacterized protein | ||||
STRING | XP_010470983.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13913 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69810.1 | 0.0 | WRKY DNA-binding protein 36 |
Publications ? help Back to Top | |||
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