PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g029040.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 282aa    MW: 32247.4 Da    PI: 5.4691
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g029040.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind27.39.7e-091753238
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHH CS
    HSF_DNA-bind  2 Flkklyeiledeelkeliswsengnsfvvldeeefak 38
                    F ++lye+++d+++++++swse+g+sfvv+d + f k
  Csa16g029040.1 17 FRSQLYEMVDDPSTDSIVSWSESGKSFVVWDDSGFLK 53
                    6789***************************998865 PP
2HSF_DNA-bind58.81.5e-18153236290
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                     F +k+y++++d+++++++swse+g+sf++++e+ef ++vLp+  +F   +++SF R L + g++kv++++++       weF+ +++ +g+
  Csa16g029040.1 153 FKRKMYDMVDDPSTDSIVSWSESGKSFIIWKETEFLRDVLPQhvFFLRYEMTSFARWLYVMGYRKVEESSQQ-------WEFAGDYLVRGE 236
                     779**************************************96669************************99.......***998887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.0E-91287IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.76E-131786IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.0E-91753IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.2E-61752IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.9E-45785IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.7E-23143237IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-15149239IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.62E-17151238IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.8E-7153176IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-16153237IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-7206218IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDGGDSNGDP MTLGSFFRSQ LYEMVDDPST DSIVSWSESG KSFVVWDDSG FLKAESLEHW  60
GFRKVEESDQ KWEYACDYFV RGQPGLKPPP HICGGPVLTP GYRRKIEIVF ARRKGLDINN  120
GLIPLSSLSC MKGMYGAANK QRSGRKQRRP SLFKRKMYDM VDDPSTDSIV SWSESGKSFI  180
IWKETEFLRD VLPQHVFFLR YEMTSFARWL YVMGYRKVEE SSQQWEFAGD YLVRGEPGEP  240
DLPTPPCTPG GFMITPETAR IMETNFAFQN KYLEHQPCNN E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g029040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895969e-34AC189596.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH014A02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470854.10.0PREDICTED: uncharacterized protein LOC104750710
TrEMBLA0A0D3C5F34e-78A0A0D3C5F3_BRAOL; Uncharacterized protein
STRINGXP_010470854.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132311127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.11e-33HSF family protein