 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Csa16g028940.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
Family |
RAV |
Protein Properties |
Length: 355aa MW: 39789.1 Da PI: 10.0391 |
Description |
RAV family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa16g028940.1 | genome | CSGP | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 42.3 | 1.9e-13 | 65 | 113 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+ykGV + +grW A+I++ ++r++lg+f eeAa+ ++ a+++++g
Csa16g028940.1 65 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEQEEAARSYDIAALRFRG 113
89****9888.8*********3.....5*************************98 PP
|
2 | B3 | 102.6 | 2.2e-32 | 191 | 289 | 1 | 93 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
f+k+ tpsdv+k++rlv+pk++ae+h + + ++++ + +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F+++ +
Csa16g028940.1 191 FEKAVTPSDVGKLNRLVIPKQHAEKHfplpsrSPSVTKGVLINFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKHLRAGDVVTFERSTGLD 285
89*************************9999844446999*************************************************765555 PP
E..E CS
B3 90 felv 93
++l+
Csa16g028940.1 286 RQLY 289
5555 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 355 aa
Download sequence Send
to blast |
MDSSCIEEIS SSTSESFSTT TAKKLSPPPP LAAAFHLYRM GSGGSSVVLD SENGVETESR 60 KLPSSKYKGV VPQPNGRWGA QIYEKHQRVW LGTFNEQEEA ARSYDIAALR FRGRDAVVNF 120 KTLLDDGDLA FLEAHSKAEI VDMLRKHTYA DELEQNNKRR LFLSVDANGK RNGSSSTVLN 180 DNVLKTREVL FEKAVTPSDV GKLNRLVIPK QHAEKHFPLP SRSPSVTKGV LINFEDVNGK 240 VWRFRYSYWN SSQSYVLTKG WSRFVKEKHL RAGDVVTFER STGLDRQLYI DWKVRSGPRE 300 NPVQVVVRLF GVDIFNVNTV KPNDVVAVCG GKRSRDADMF GIRCSKKQTI INAL*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AB013887 | 0.0 | AB013887.1 Arabidopsis thaliana mRNA for RAV2, complete cds. |
GenBank | AC011665 | 0.0 | AC011665.8 Arabidopsis thaliana chromosome 1 BAC T6L1 genomic sequence, complete sequence. |
GenBank | AC011914 | 0.0 | AC011914.9 Arabidopsis thaliana chromosome 1 BAC F14K14 genomic sequence, complete sequence. |
GenBank | AF360312 | 0.0 | AF360312.1 Arabidopsis thaliana putative DNA-binding protein(RAV2 (At1g68840) mRNA, complete cds. |
GenBank | AY056361 | 0.0 | AY056361.1 Arabidopsis thaliana putative DNA-binding protein RAV2 (At1g68840) mRNA, complete cds. |
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Publications
? help Back to Top |
- Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
RAV genes: regulation of floral induction and beyond. Ann. Bot., 2014. 114(7): p. 1459-70 [PMID:24812253] - Marín-González E, et al.
SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures. Plant Physiol., 2015. 169(2): p. 1214-24 [PMID:26243615] - Sun YW, et al.
Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus. Sci Rep, 2015. 5: p. 16476 [PMID:26602265] - Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering. Plant Sci., 2015. 241: p. 78-95 [PMID:26706061] - Matías-Hernández L, et al.
TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation. Plant Physiol., 2016. 170(3): p. 1624-39 [PMID:26802039] - Li P, et al.
The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses. Physiol Plant, 2017. 159(4): p. 416-432 [PMID:27747895]
|