PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g057050.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 468aa    MW: 51935.5 Da    PI: 6.797
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g057050.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.83e-30116174160
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     ++DgynWrKYGqK vkg+ef rsYYrCt+++C++kk++ers   ++vv+++Y geH+h+k
  Csa15g057050.1 116 MEDGYNWRKYGQKLVKGNEFVRSYYRCTHPNCKAKKQLERSP-GGQVVDTVYFGEHDHPK 174
                     58****************************************.***************85 PP
2WRKY105.82.3e-33288346159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dgy+WrKYGqK+vkgs++prsYYrC+s+gCpvkk+vers++d+k++++tYeg+H+h+
  Csa15g057050.1 288 VNDGYRWRKYGQKSVKGSPYPRSYYRCSSSGCPVKKHVERSSHDTKLLITTYEGKHDHD 346
                     58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.355111175IPR003657WRKY domain
SuperFamilySSF1182901.07E-24112175IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.4E-26113175IPR003657WRKY domain
SMARTSM007741.7E-34116174IPR003657WRKY domain
PfamPF031069.7E-24117173IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-34274348IPR003657WRKY domain
SuperFamilySSF1182901.31E-28282348IPR003657WRKY domain
PROSITE profilePS5081134.991283348IPR003657WRKY domain
SMARTSM007741.3E-38288347IPR003657WRKY domain
PfamPF031063.0E-26289345IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MAEEVVKVPV SDMELDDSSE TKVADDVVAT DEMEAKPVTV TRTETVVEGC QTESSKATEC  60
KELLQPVPHT TASQSEVDVA ASPTSEKAPK VSESSTVLSL QSGSEGNSPF IREKVMEDGY  120
NWRKYGQKLV KGNEFVRSYY RCTHPNCKAK KQLERSPGGQ VVDTVYFGEH DHPKPLTGPV  180
PINQDKRSDV FTAVSKEKSS GSIVQTPRQT EPPKIHRGLH VSVVPPADDV KTDSSQSSRI  240
KGDNSHKDYN SPSSKRRKKG GNIEPSPVER STNDSRIVVH TQTLFDIVND GYRWRKYGQK  300
SVKGSPYPRS YYRCSSSGCP VKKHVERSSH DTKLLITTYE GKHDHDMPPG RVVTHNNMLD  360
SEVDDKELNV KEGDANKTPQ SSDQHDEDHP IKKTKTNGFE KSLDQGPVLD EKLKEEIKDI  420
SDVNKDHAAN HTKLETKSDD KTTACHEKAV RTLVTEEQKT KTEPAQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-49115350176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g057050.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935460.0AB493546.1 Arabidopsis thaliana At2g04880 mRNA for hypothetical protein, partial cds, clone: RAAt2g04880.
GenBankAF4423900.0AF442390.1 Arabidopsis thaliana WRKY transcription factor 1 splice variant 2 (WRKY1) mRNA, complete cds; alternatively spliced.
GenBankBT0291670.0BT029167.1 Arabidopsis thaliana At2g04880 mRNA, complete cds.
GenBankX929760.0X92976.1 A.thaliana mRNA for ZAP1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467049.10.0PREDICTED: WRKY transcription factor 1-like
RefseqXP_010467050.10.0PREDICTED: WRKY transcription factor 1-like
SwissprotQ9SI370.0WRKY1_ARATH; WRKY transcription factor 1
TrEMBLR0G4V60.0R0G4V6_9BRAS; Uncharacterized protein
STRINGXP_010467049.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79492639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.20.0zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]