PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa15g050110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Trihelix | ||||||||
Protein Properties | Length: 336aa MW: 39208.1 Da PI: 4.4544 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 45.7 | 1.7e-14 | 93 | 177 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W +qe +L+e+ ++ +l+r++l+ +W evs+k+ +e +e+s +qC+ ++nl+++y+k+k +k + ss++++f++l+ Csa15g050110.1 93 WREQEAFVLLEIWGDRFLQLGRRSLRNEDWNEVSEKVsEELRMEKSETQCRRMIDNLKRKYRKEKIKVEK-SGLGSSKWAFFNKLD 177 *************************************778899*********************977776.478999*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.0E-20 | 92 | 178 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MGDSEDETGY PKKFYSLNRQ SHPMYSRPIP KRHAYYHEEE DEDEVDGDEE EPPGGGGYSR 60 GNERFLKRQK PNKPVASGYD FAGPSDGKVG YDWREQEAFV LLEIWGDRFL QLGRRSLRNE 120 DWNEVSEKVS EELRMEKSET QCRRMIDNLK RKYRKEKIKV EKSGLGSSKW AFFNKLDMLL 180 CVSPKSDLGL ACGVDSGEFV FMNTKVYLDK SNGFDEMMDS PGDSEEEEDE EDEVDYERKK 240 FNDAASYKML ADSVERFGKV FEKMEKSKKE QMKELEKMRA DFQKDLELQK KRIVDRAQSE 300 IARLREEEEN NHHGDENESE DEEMENDSDV NLSDE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa15g050110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB020746 | 0.0 | AB020746.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MOB24. | |||
GenBank | AK220644 | 0.0 | AK220644.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-59-N16. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010466857.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
TrEMBL | D7L537 | 0.0 | D7L537_ARALL; Uncharacterized protein | ||||
TrEMBL | R0HMM0 | 0.0 | R0HMM0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010466857.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9779 | 27 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24490.1 | 1e-159 | Trihelix family protein |