PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g048440.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 296aa    MW: 32176.3 Da    PI: 7.1009
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g048440.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.66.6e-344195155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprlrWt+eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  Csa15g048440.1 41 KPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRL 95
                    79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.5413898IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-323897IPR009057Homeodomain-like
SuperFamilySSF466895.91E-174096IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-244196IPR006447Myb domain, plants
PfamPF002491.6E-74393IPR001005SANT/Myb domain
PfamPF143791.1E-26139185IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MYSAIRSLPL DGGHVGADYH GPLDGTNLPG DACLVLTTDP KPRLRWTSEL HERFVDAVTQ  60
LGGPDKATPK TIMRTMGVKG LTLYHLKSHL QKFRLGRQAC KESTENSKDA SCVGESQDTG  120
SSSTSSLRLA QQEQNEGYQV TEALRAQMEV QRRLHEQLEV QRRLQLRIEA QGKYLQSILE  180
KACKAFDEQA AAFAGLEAAR EELSELAIKV SNVSQGTTVP FFDATKMMMM PSLSELAVAI  240
DNKNNVTTNC SVESSLTSVT NGSSISAASM KKRQRGDNMG VGYESGWIMP SSTIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-194197157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-194197157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-194197157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-194197157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00378DAPTransfer from AT3G24120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g048440.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0503550.0AY050355.1 Arabidopsis thaliana AT3g24120/MUJ8_3 mRNA, complete cds.
GenBankAY0884280.0AY088428.1 Arabidopsis thaliana clone 6626 mRNA, complete sequence.
GenBankAY0940460.0AY094046.1 Arabidopsis thaliana AT3g24120/MUJ8_3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466781.10.0PREDICTED: protein PHR1-LIKE 2 isoform X2
RefseqXP_010488496.10.0PREDICTED: protein PHR1-LIKE 2 isoform X2
RefseqXP_010513207.10.0PREDICTED: protein PHR1-LIKE 2 isoform X2
SwissprotQ94A570.0PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A178VFD10.0A0A178VFD1_ARATH; Uncharacterized protein
STRINGAT3G24120.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35152561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.10.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]