PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa14g038450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 238aa MW: 27321.8 Da PI: 5.5475 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.4 | 2.3e-07 | 157 | 201 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r+RR+ri ++ +eL +l+P + +K + ae+ A +Y+k Lq Csa14g038450.1 157 SIAARKRRRRITEKTHELGKLIPGS-----QKHNTAEMFHAAAKYVKFLQ 201 6788*******************98.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.392 | 151 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.18E-10 | 152 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.7E-10 | 154 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-8 | 157 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.9E-5 | 157 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MDCLSYFSPT SDIIQLQDCF VPETDTFFFQ AQPQHQLHQP LHLEEALSPP LCEFSHFYEP 60 FLPPQDIFLP SPKTEVFNES QDLDAFFPTP KHQKLINSSF HFNTNEPLFP PNPNILDSYI 120 TETSNFSEFL VPDFSPAFKV GWSDKGDTKK PELSAQSIAA RKRRRRITEK THELGKLIPG 180 SQKHNTAEMF HAAAKYVKFL QAQIEILQLN QTNMQTRESS KVGREMQFLL ASQEIQE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 164 | RKRRR |
2 | 161 | 166 | KRRRRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa14g038450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010478497.1 | 1e-147 | PREDICTED: transcription factor bHLH52-like | ||||
Swissprot | Q9SA82 | 1e-104 | BH052_ARATH; Transcription factor bHLH52 | ||||
TrEMBL | R0INR8 | 1e-131 | R0INR8_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010478497.1 | 1e-147 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4547 | 25 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30670.1 | 1e-95 | bHLH family protein |
Publications ? help Back to Top | |||
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