PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g032820.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 359aa MW: 40184.6 Da PI: 8.8614

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g032820.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.7	2.3e-32	218	273	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs++AtPk+i++lmkv+gLt+++vkSHLQkYRl+ Csa14g032820.1 218 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDLMKVDGLTNDEVKSHLQKYRLH 273 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.8E-29	215	276	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.163	215	275	IPR017930	Myb domain
SuperFamily	SSF46689	4.18E-18	216	276	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.7E-27	218	273	IPR006447	Myb domain, plants
Pfam	PF00249	2.6E-7	220	271	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MDYTHKMKRC HEYVEALEEE HKKILVFQRE LPLCLELVTQ AIESCRKELS GSSSMSEHVR 60 SQSECSERTT SECGGVAAVF EEFIPIKWSS SSSSDHENDR DGADEKKIKT NNENNGDKKK 120 SDWLRSVQLW NQSPDPQPKE DDQVVNKQKA AAVIGVKRNN AGAFQPFQKE KPNKANDHSP 180 QPLKTITPTP TTTSSSTAET VGGKSEFEQL KQSQSSRKQR RCWSPELHRR FLHALQQLGG 240 SHVATPKQIR DLMKVDGLTN DEVKSHLQKY RLHTRRPATP SSTNGGENQQ QQQRQFMVVE 300 GIWVPSSHDH ATNTRVYAPV ATQPPPQSSQ SGERSSSHRC KSPATSSSTH TPQLLPLS*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MDYTHKMKRC HEYVEALEEE HKKILVFQRE LPLCLELVTQ AIESCRKELS GSSSMSEHVR  60
SQSECSERTT SECGGVAAVF EEFIPIKWSS SSSSDHENDR DGADEKKIKT NNENNGDKKK  120
SDWLRSVQLW NQSPDPQPKE DDQVVNKQKA AAVIGVKRNN AGAFQPFQKE KPNKANDHSP  180
QPLKTITPTP TTTSSSTAET VGGKSEFEQL KQSQSSRKQR RCWSPELHRR FLHALQQLGG  240
SHVATPKQIR DLMKVDGLTN DEVKSHLQKY RLHTRRPATP SSTNGGENQQ QQQRQFMVVE  300
GIWVPSSHDH ATNTRVYAPV ATQPPPQSSQ SGERSSSHRC KSPATSSSTH TPQLLPLS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g032820.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010460352.1	0.0	PREDICTED: myb family transcription factor EFM-like
Swissprot	Q9FPE8	1e-164	HHO3_ARATH; Transcription factor HHO3
TrEMBL	R0GQJ3	0.0	R0GQJ3_9BRAS; Uncharacterized protein
STRING	XP_010460352.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3491	28	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	1e-143	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]