PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g006230.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 414aa    MW: 45680.3 Da    PI: 8.0379
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g006230.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.76.3e-114974126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ++++ C+f++rtG C yG++C+++H+
  Csa14g006230.1 49 PGERDCQFYLRTGLCGYGSSCRYNHP 74
                    5789*********************9 PP
2zf-CCCH36.58.1e-1295119327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +f++tG CkyG++Ck++H++
  Csa14g006230.1  95 QPDCEYFLKTGACKYGSTCKYHHPK 119
                     789********************96 PP
3zf-CCCH37.73.4e-12139164227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C++++rtGtC++G  C+F+H++
  Csa14g006230.1 139 GEKPCPYYLRTGTCRFGVACRFHHPQ 164
                     689*********************97 PP
4zf-CCCH40.25.7e-13265289226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++Crff+ tGtCkyGd Ck++H+
  Csa14g006230.1 265 DRPECRFFMNTGTCKYGDDCKYNHP 289
                     689*********************8 PP
5zf-CCCH29.21.6e-09310335126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C +f+ +G+Ck+G++CkF H+
  Csa14g006230.1 310 PGQPACGNFRSYGFCKFGPNCKFDHP 335
                     57899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.3614876IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-54875IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-85074IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-55276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-45473IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.89692120IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-692119IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-995119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-697120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-498118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-6137166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.032137165IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-6137164IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-10139164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5141164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.591263291IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-7264290IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10265289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6267289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5269288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5305335IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-5309336IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.845309337IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-8311335IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MLRPMSDTQL VQSSLVSIRS SDFNIDDAFK KMKVNDDGVA ELNPYPDRPG ERDCQFYLRT  60
GLCGYGSSCR YNHPTNLAQG SNAYYKEELP ERIGQPDCEY FLKTGACKYG STCKYHHPKD  120
RNGAEPVLFN VIGLPMRQGE KPCPYYLRTG TCRFGVACRF HHPQPDNGHS TAYGMPSYPS  180
TGLQYASGLA MMSTYGTLPR PQVPQSYVPI MISPSQGLFP PQGWGTYMAA TNPMYNVKNQ  240
PYYSGSSASV PVAMALNRDL PESSDRPECR FFMNTGTCKY GDDCKYNHPG VRISPLPPSL  300
INPFVLPARP GQPACGNFRS YGFCKFGPNC KFDHPVLPYP GLTMSSSLPT PYASPVLSHQ  360
RISPSPSRSD SKSHSNGKPD VKKQSSETEK PDDDSEQLNN SEVHDLSEKS SST*
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa14g006230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934340.0AB493434.1 Arabidopsis thaliana At1g04990 mRNA for hypothetical protein, partial cds, clone: RAAt1g04990.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010457569.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like
SwissprotQ94AD90.0C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLD7KEA00.0D7KEA0_ARALL; Predicted protein
STRINGXP_010457569.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.20.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]