PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa13g056340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 362aa MW: 38880.9 Da PI: 8.8474 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 72.3 | 7e-23 | 248 | 311 | 1 | 64 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 eke+kre+rkq+NRe+ArrsR+RK+ae+e+L+ kv++L aeN++L++++++l++e++kl+ e+e Csa13g056340.1 248 EKEVKREKRKQSNRESARRSRLRKQAETEQLAVKVDALVAENMTLRSKVSQLNDESEKLRLENE 311 89*********************************************************99885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 1.3E-30 | 1 | 96 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 3.9E-15 | 130 | 230 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.0E-16 | 244 | 307 | No hit | No description |
SMART | SM00338 | 9.5E-20 | 248 | 312 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 9.4E-22 | 248 | 310 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.771 | 250 | 313 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.75E-11 | 251 | 307 | No hit | No description |
CDD | cd14702 | 4.37E-21 | 253 | 302 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 255 | 270 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 362 aa Download sequence Send to blast |
MGSNEEGNLT NSADKPTQPA PVTDQSNVHV YHHDWAAMQA YYGSRVAIPQ YYNSNVATGH 60 APPPYMWASP SPMMAPYGAP YPPFCPPGGV YAHPGVQMGS QPQGPVSQAT PGVTTPLAMD 120 APSNSPGNTD HGFMKKLKEF DGLAMSISNN KVGSTGHSSS EHRSSQSSEN DGSSNGSDGN 180 TTGGEQSKRK RRRERSPSTG EKPSSQTSPP LRGENEKADV TMGTPVMPTA MDFQNSGGMN 240 GIPQPWNEKE VKREKRKQSN RESARRSRLR KQAETEQLAV KVDALVAENM TLRSKVSQLN 300 DESEKLRLEN EALLDQLKAQ ATGKTENLIS RVDKNNSVSG GKNVQHQLLN ASPITDPVAA 360 S* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 187 | 192 | KRKRRR |
2 | 188 | 192 | RKRRR |
3 | 264 | 270 | RRSRLRK |
4 | 264 | 271 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. GBF2 is found to bind asymmetrically to the G-box. {ECO:0000269|PubMed:1373374}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa13g056340.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY085648 | 0.0 | AY085648.1 Arabidopsis thaliana clone 16533 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010456216.1 | 0.0 | PREDICTED: G-box-binding factor 2 isoform X2 | ||||
Swissprot | P42775 | 0.0 | GBF2_ARATH; G-box-binding factor 2 | ||||
TrEMBL | R0FFA0 | 0.0 | R0FFA0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010422771.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3571 | 26 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G01120.1 | 0.0 | G-box binding factor 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|